Gene : AT1G31500 A. thaliana TAIR10
Defline:  (1 of 2) PTHR12121//PTHR12121:SF42 - CARBON CATABOLITE REPRESSOR PROTEIN 4 // CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 4-RELATED Genomic Order:  3121
Name:  ? AT1G31500 Secondary Identifier:  ? PAC:19651598
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G31500 0.5kb upstream 0.5kb upstream 3473 true Chr1: 11273605-11277077 Arabidopsis thaliana
AT1G31500 0.5kb upstream 0.5kb upstream 500 false Chr1: 11276578-11277077 Arabidopsis thaliana
AT1G31500 0.5kb downstream 0.5kb downstream 3473 true Chr1: 11273105-11276577 Arabidopsis thaliana
AT1G31500 0.5kb downstream 0.5kb downstream 500 false Chr1: 11273105-11273604 Arabidopsis thaliana
AT1G31500 1.0kb upstream 1.0kb upstream 3973 true Chr1: 11273605-11277577 Arabidopsis thaliana
AT1G31500 1.0kb upstream 1.0kb upstream 1000 false Chr1: 11276578-11277577 Arabidopsis thaliana
AT1G31500 1.0kb downstream 1.0kb downstream 3973 true Chr1: 11272605-11276577 Arabidopsis thaliana
AT1G31500 1.0kb downstream 1.0kb downstream 1000 false Chr1: 11272605-11273604 Arabidopsis thaliana
AT1G31500 2.0kb upstream 2.0kb upstream 4973 true Chr1: 11273605-11278577 Arabidopsis thaliana
AT1G31500 2.0kb upstream 2.0kb upstream 2000 false Chr1: 11276578-11278577 Arabidopsis thaliana
AT1G31500 2.0kb downstream 2.0kb downstream 4973 true Chr1: 11271605-11276577 Arabidopsis thaliana
AT1G31500 2.0kb downstream 2.0kb downstream 2000 false Chr1: 11271605-11273604 Arabidopsis thaliana
AT1G31500 5.0kb upstream 5.0kb upstream 7973 true Chr1: 11273605-11281577 Arabidopsis thaliana
AT1G31500 5.0kb upstream 5.0kb upstream 5000 false Chr1: 11276578-11281577 Arabidopsis thaliana
AT1G31500 5.0kb downstream 5.0kb downstream 7973 true Chr1: 11268605-11276577 Arabidopsis thaliana
AT1G31500 5.0kb downstream 5.0kb downstream 5000 false Chr1: 11268605-11273604 Arabidopsis thaliana
AT1G31500 10.0kb upstream 10.0kb upstream 12973 true Chr1: 11273605-11286577 Arabidopsis thaliana
AT1G31500 10.0kb upstream 10.0kb upstream 10000 false Chr1: 11276578-11286577 Arabidopsis thaliana
AT1G31500 10.0kb downstream 10.0kb downstream 12973 true Chr1: 11263605-11276577 Arabidopsis thaliana
AT1G31500 10.0kb downstream 10.0kb downstream 10000 false Chr1: 11263605-11273604 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374949 5261 Brassicaceae View MSA
123839808 5264 Brassicales-Malvales View MSA
124341518 5266 SBM View MSA
124240125 5268 Malvidae View MSA
124063704 5270 Rosid View MSA
123740747 5271 Pentapetalae View MSA
122787902 5272 Eudicot View MSA
122047277 5273 Angiosperm View MSA
121350616 5274 Embryophyte View MSA
123428031 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.918       High
cufflinks 1.66        
cufflinks 1.669        
cufflinks 1.435        
cufflinks 1.401        
cufflinks 1.248       Low

0 Strain