Gene : AAE14 A. thaliana TAIR10
Primary Identifier:  ? AT1G30520 Defline:  (1 of 1) 6.2.1.26 - o-succinylbenzoate--CoA ligase / OSB-CoA synthetase
Genomic Order:  3019 Name:  ? AT1G30520
Secondary Identifier:  ? PAC:19657866
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5837 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G30520 0.5kb upstream 0.5kb upstream 3217 true Chr1: 10810484-10813700 Arabidopsis thaliana
AT1G30520 0.5kb upstream 0.5kb upstream 500 false Chr1: 10810484-10810983 Arabidopsis thaliana
AT1G30520 0.5kb downstream 0.5kb downstream 3217 true Chr1: 10810984-10814200 Arabidopsis thaliana
AT1G30520 0.5kb downstream 0.5kb downstream 500 false Chr1: 10813701-10814200 Arabidopsis thaliana
AT1G30520 1.0kb upstream 1.0kb upstream 3717 true Chr1: 10809984-10813700 Arabidopsis thaliana
AT1G30520 1.0kb upstream 1.0kb upstream 1000 false Chr1: 10809984-10810983 Arabidopsis thaliana
AT1G30520 1.0kb downstream 1.0kb downstream 3717 true Chr1: 10810984-10814700 Arabidopsis thaliana
AT1G30520 1.0kb downstream 1.0kb downstream 1000 false Chr1: 10813701-10814700 Arabidopsis thaliana
AT1G30520 2.0kb upstream 2.0kb upstream 4717 true Chr1: 10808984-10813700 Arabidopsis thaliana
AT1G30520 2.0kb upstream 2.0kb upstream 2000 false Chr1: 10808984-10810983 Arabidopsis thaliana
AT1G30520 2.0kb downstream 2.0kb downstream 4717 true Chr1: 10810984-10815700 Arabidopsis thaliana
AT1G30520 2.0kb downstream 2.0kb downstream 2000 false Chr1: 10813701-10815700 Arabidopsis thaliana
AT1G30520 5.0kb upstream 5.0kb upstream 7717 true Chr1: 10805984-10813700 Arabidopsis thaliana
AT1G30520 5.0kb upstream 5.0kb upstream 5000 false Chr1: 10805984-10810983 Arabidopsis thaliana
AT1G30520 5.0kb downstream 5.0kb downstream 7717 true Chr1: 10810984-10818700 Arabidopsis thaliana
AT1G30520 5.0kb downstream 5.0kb downstream 5000 false Chr1: 10813701-10818700 Arabidopsis thaliana
AT1G30520 10.0kb upstream 10.0kb upstream 12717 true Chr1: 10800984-10813700 Arabidopsis thaliana
AT1G30520 10.0kb upstream 10.0kb upstream 10000 false Chr1: 10800984-10810983 Arabidopsis thaliana
AT1G30520 10.0kb downstream 10.0kb downstream 12717 true Chr1: 10810984-10823700 Arabidopsis thaliana
AT1G30520 10.0kb downstream 10.0kb downstream 10000 false Chr1: 10813701-10823700 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372507 5261 Brassicaceae View MSA
123834276 5264 Brassicales-Malvales View MSA
124340453 5266 SBM View MSA
124243715 5268 Malvidae View MSA
124061989 5270 Rosid View MSA
123752148 5271 Pentapetalae View MSA
122787718 5272 Eudicot View MSA
122042580 5273 Angiosperm View MSA
121346156 5274 Embryophyte View MSA
123427881 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.664        
cufflinks 0.655        
cufflinks 12.121       High
cufflinks 0.809        
cufflinks 7.477        
cufflinks 0.647        

0 Strain