Gene : AT1G30240 A. thaliana TAIR10
Defline:  (1 of 1) PF08167 - rRNA processing/ribosome biogenesis (RIX1) Genomic Order:  2991
Name:  ? AT1G30240 Secondary Identifier:  ? PAC:19650777
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G30240 0.5kb upstream 0.5kb upstream 5337 true Chr1: 10641099-10646435 Arabidopsis thaliana
AT1G30240 0.5kb upstream 0.5kb upstream 500 false Chr1: 10645936-10646435 Arabidopsis thaliana
AT1G30240 0.5kb downstream 0.5kb downstream 5337 true Chr1: 10640599-10645935 Arabidopsis thaliana
AT1G30240 0.5kb downstream 0.5kb downstream 500 false Chr1: 10640599-10641098 Arabidopsis thaliana
AT1G30240 1.0kb upstream 1.0kb upstream 5837 true Chr1: 10641099-10646935 Arabidopsis thaliana
AT1G30240 1.0kb upstream 1.0kb upstream 1000 false Chr1: 10645936-10646935 Arabidopsis thaliana
AT1G30240 1.0kb downstream 1.0kb downstream 5837 true Chr1: 10640099-10645935 Arabidopsis thaliana
AT1G30240 1.0kb downstream 1.0kb downstream 1000 false Chr1: 10640099-10641098 Arabidopsis thaliana
AT1G30240 2.0kb upstream 2.0kb upstream 6837 true Chr1: 10641099-10647935 Arabidopsis thaliana
AT1G30240 2.0kb upstream 2.0kb upstream 2000 false Chr1: 10645936-10647935 Arabidopsis thaliana
AT1G30240 2.0kb downstream 2.0kb downstream 6837 true Chr1: 10639099-10645935 Arabidopsis thaliana
AT1G30240 2.0kb downstream 2.0kb downstream 2000 false Chr1: 10639099-10641098 Arabidopsis thaliana
AT1G30240 5.0kb upstream 5.0kb upstream 9837 true Chr1: 10641099-10650935 Arabidopsis thaliana
AT1G30240 5.0kb upstream 5.0kb upstream 5000 false Chr1: 10645936-10650935 Arabidopsis thaliana
AT1G30240 5.0kb downstream 5.0kb downstream 9837 true Chr1: 10636099-10645935 Arabidopsis thaliana
AT1G30240 5.0kb downstream 5.0kb downstream 5000 false Chr1: 10636099-10641098 Arabidopsis thaliana
AT1G30240 10.0kb upstream 10.0kb upstream 14837 true Chr1: 10641099-10655935 Arabidopsis thaliana
AT1G30240 10.0kb upstream 10.0kb upstream 10000 false Chr1: 10645936-10655935 Arabidopsis thaliana
AT1G30240 10.0kb downstream 10.0kb downstream 14837 true Chr1: 10631099-10645935 Arabidopsis thaliana
AT1G30240 10.0kb downstream 10.0kb downstream 10000 false Chr1: 10631099-10641098 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368067 5261 Brassicaceae View MSA
123833962 5264 Brassicales-Malvales View MSA
124345504 5266 SBM View MSA
124240318 5268 Malvidae View MSA
124050381 5270 Rosid View MSA
123750218 5271 Pentapetalae View MSA
122787219 5272 Eudicot View MSA
122050850 5273 Angiosperm View MSA
121349026 5274 Embryophyte View MSA
123425273 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.313        
cufflinks 1.716        
cufflinks 0.927       Low
cufflinks 1.726        
cufflinks 0.841       Low
cufflinks 2.054       High

0 Strain