Gene : CARB A. thaliana TAIR10
Primary Identifier:  ? AT1G29900 Defline:  (1 of 1) K01955 - carbamoyl-phosphate synthase large subunit (carB, CPA2)
Genomic Order:  2954 Name:  ? AT1G29900
Secondary Identifier:  ? PAC:19655950
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana ARGSYNBSUB-PWY Arabidopsis thaliana pathologic  
Athaliana ARGSYN-PWY Arabidopsis thaliana pathologic  
Athaliana CITRULBIO-PWY Arabidopsis thaliana pathologic  
Athaliana GLUTAMINDEG-PWY Arabidopsis thaliana pathologic  
Athaliana PWY0-162 Arabidopsis thaliana pathologic  
Athaliana PWY-4984 Arabidopsis thaliana pathologic  
Athaliana PWY-5686 Arabidopsis thaliana pathologic  
Athaliana PWY-7211 Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G29900 0.5kb upstream 0.5kb upstream 4658 true Chr1: 10467554-10472211 Arabidopsis thaliana
AT1G29900 0.5kb upstream 0.5kb upstream 500 false Chr1: 10467554-10468053 Arabidopsis thaliana
AT1G29900 0.5kb downstream 0.5kb downstream 4658 true Chr1: 10468054-10472711 Arabidopsis thaliana
AT1G29900 0.5kb downstream 0.5kb downstream 500 false Chr1: 10472212-10472711 Arabidopsis thaliana
AT1G29900 1.0kb upstream 1.0kb upstream 5158 true Chr1: 10467054-10472211 Arabidopsis thaliana
AT1G29900 1.0kb upstream 1.0kb upstream 1000 false Chr1: 10467054-10468053 Arabidopsis thaliana
AT1G29900 1.0kb downstream 1.0kb downstream 5158 true Chr1: 10468054-10473211 Arabidopsis thaliana
AT1G29900 1.0kb downstream 1.0kb downstream 1000 false Chr1: 10472212-10473211 Arabidopsis thaliana
AT1G29900 2.0kb upstream 2.0kb upstream 6158 true Chr1: 10466054-10472211 Arabidopsis thaliana
AT1G29900 2.0kb upstream 2.0kb upstream 2000 false Chr1: 10466054-10468053 Arabidopsis thaliana
AT1G29900 2.0kb downstream 2.0kb downstream 6158 true Chr1: 10468054-10474211 Arabidopsis thaliana
AT1G29900 2.0kb downstream 2.0kb downstream 2000 false Chr1: 10472212-10474211 Arabidopsis thaliana
AT1G29900 5.0kb upstream 5.0kb upstream 9158 true Chr1: 10463054-10472211 Arabidopsis thaliana
AT1G29900 5.0kb upstream 5.0kb upstream 5000 false Chr1: 10463054-10468053 Arabidopsis thaliana
AT1G29900 5.0kb downstream 5.0kb downstream 9158 true Chr1: 10468054-10477211 Arabidopsis thaliana
AT1G29900 5.0kb downstream 5.0kb downstream 5000 false Chr1: 10472212-10477211 Arabidopsis thaliana
AT1G29900 10.0kb upstream 10.0kb upstream 14158 true Chr1: 10458054-10472211 Arabidopsis thaliana
AT1G29900 10.0kb upstream 10.0kb upstream 10000 false Chr1: 10458054-10468053 Arabidopsis thaliana
AT1G29900 10.0kb downstream 10.0kb downstream 14158 true Chr1: 10468054-10482211 Arabidopsis thaliana
AT1G29900 10.0kb downstream 10.0kb downstream 10000 false Chr1: 10472212-10482211 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363833 5261 Brassicaceae View MSA
123832524 5264 Brassicales-Malvales View MSA
124337507 5266 SBM View MSA
124239467 5268 Malvidae View MSA
124066420 5270 Rosid View MSA
123736766 5271 Pentapetalae View MSA
122791701 5272 Eudicot View MSA
122044632 5273 Angiosperm View MSA
121347318 5274 Embryophyte View MSA
123424226 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 43.605     High  
cufflinks 36.815     High  
cufflinks 44.224     High High
cufflinks 40.597     High  
cufflinks 35.335     High Low
cufflinks 41.422     High  

0 Strain