Gene : CAB1 A. thaliana TAIR10
Primary Identifier:  ? AT1G29930 Defline:  (1 of 5) K08912 - light-harvesting complex II chlorophyll a/b binding protein 1 (LHCB1)
Genomic Order:  2957 Name:  ? AT1G29930
Secondary Identifier:  ? PAC:19657262
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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G29930 0.5kb upstream 0.5kb upstream 1544 true Chr1: 10477505-10479048 Arabidopsis thaliana
AT1G29930 0.5kb upstream 0.5kb upstream 500 false Chr1: 10477505-10478004 Arabidopsis thaliana
AT1G29930 0.5kb downstream 0.5kb downstream 1544 true Chr1: 10478005-10479548 Arabidopsis thaliana
AT1G29930 0.5kb downstream 0.5kb downstream 500 false Chr1: 10479049-10479548 Arabidopsis thaliana
AT1G29930 1.0kb upstream 1.0kb upstream 2044 true Chr1: 10477005-10479048 Arabidopsis thaliana
AT1G29930 1.0kb upstream 1.0kb upstream 1000 false Chr1: 10477005-10478004 Arabidopsis thaliana
AT1G29930 1.0kb downstream 1.0kb downstream 2044 true Chr1: 10478005-10480048 Arabidopsis thaliana
AT1G29930 1.0kb downstream 1.0kb downstream 1000 false Chr1: 10479049-10480048 Arabidopsis thaliana
AT1G29930 2.0kb upstream 2.0kb upstream 3044 true Chr1: 10476005-10479048 Arabidopsis thaliana
AT1G29930 2.0kb upstream 2.0kb upstream 2000 false Chr1: 10476005-10478004 Arabidopsis thaliana
AT1G29930 2.0kb downstream 2.0kb downstream 3044 true Chr1: 10478005-10481048 Arabidopsis thaliana
AT1G29930 2.0kb downstream 2.0kb downstream 2000 false Chr1: 10479049-10481048 Arabidopsis thaliana
AT1G29930 5.0kb upstream 5.0kb upstream 6044 true Chr1: 10473005-10479048 Arabidopsis thaliana
AT1G29930 5.0kb upstream 5.0kb upstream 5000 false Chr1: 10473005-10478004 Arabidopsis thaliana
AT1G29930 5.0kb downstream 5.0kb downstream 6044 true Chr1: 10478005-10484048 Arabidopsis thaliana
AT1G29930 5.0kb downstream 5.0kb downstream 5000 false Chr1: 10479049-10484048 Arabidopsis thaliana
AT1G29930 10.0kb upstream 10.0kb upstream 11044 true Chr1: 10468005-10479048 Arabidopsis thaliana
AT1G29930 10.0kb upstream 10.0kb upstream 10000 false Chr1: 10468005-10478004 Arabidopsis thaliana
AT1G29930 10.0kb downstream 10.0kb downstream 11044 true Chr1: 10478005-10489048 Arabidopsis thaliana
AT1G29930 10.0kb downstream 10.0kb downstream 10000 false Chr1: 10479049-10489048 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379914 5261 Brassicaceae View MSA
123837903 5264 Brassicales-Malvales View MSA
124347417 5266 SBM View MSA
124244902 5268 Malvidae View MSA
124072480 5270 Rosid View MSA
123751711 5271 Pentapetalae View MSA
122794402 5272 Eudicot View MSA
122050341 5273 Angiosperm View MSA
121349648 5274 Embryophyte View MSA
123426313 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9421.784     High  
cufflinks 186.506     High  
cufflinks 18191.055     High High
cufflinks 183.342     High  
cufflinks 15706.575     High  
cufflinks 76.157     High Low

0 Strain