Gene : AT1G49475 A. thaliana TAIR10
Defline:  (1 of 92) PF02362 - B3 DNA binding domain (B3) Genomic Order:  3974
Name:  ? AT1G49475 Secondary Identifier:  ? PAC:19649723
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G49475 0.5kb upstream 0.5kb upstream 1597 true Chr1: 18312420-18314016 Arabidopsis thaliana
AT1G49475 0.5kb upstream 0.5kb upstream 500 false Chr1: 18312420-18312919 Arabidopsis thaliana
AT1G49475 0.5kb downstream 0.5kb downstream 1597 true Chr1: 18312920-18314516 Arabidopsis thaliana
AT1G49475 0.5kb downstream 0.5kb downstream 500 false Chr1: 18314017-18314516 Arabidopsis thaliana
AT1G49475 1.0kb upstream 1.0kb upstream 2097 true Chr1: 18311920-18314016 Arabidopsis thaliana
AT1G49475 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18311920-18312919 Arabidopsis thaliana
AT1G49475 1.0kb downstream 1.0kb downstream 2097 true Chr1: 18312920-18315016 Arabidopsis thaliana
AT1G49475 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18314017-18315016 Arabidopsis thaliana
AT1G49475 2.0kb upstream 2.0kb upstream 3097 true Chr1: 18310920-18314016 Arabidopsis thaliana
AT1G49475 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18310920-18312919 Arabidopsis thaliana
AT1G49475 2.0kb downstream 2.0kb downstream 3097 true Chr1: 18312920-18316016 Arabidopsis thaliana
AT1G49475 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18314017-18316016 Arabidopsis thaliana
AT1G49475 5.0kb upstream 5.0kb upstream 6097 true Chr1: 18307920-18314016 Arabidopsis thaliana
AT1G49475 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18307920-18312919 Arabidopsis thaliana
AT1G49475 5.0kb downstream 5.0kb downstream 6097 true Chr1: 18312920-18319016 Arabidopsis thaliana
AT1G49475 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18314017-18319016 Arabidopsis thaliana
AT1G49475 10.0kb upstream 10.0kb upstream 11097 true Chr1: 18302920-18314016 Arabidopsis thaliana
AT1G49475 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18302920-18312919 Arabidopsis thaliana
AT1G49475 10.0kb downstream 10.0kb downstream 11097 true Chr1: 18312920-18324016 Arabidopsis thaliana
AT1G49475 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18314017-18324016 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378413 5261 Brassicaceae View MSA
123801858 5264 Brassicales-Malvales View MSA
124299112 5266 SBM View MSA
124248132 5268 Malvidae View MSA
124073823 5270 Rosid View MSA
123753418 5271 Pentapetalae View MSA
122797829 5272 Eudicot View MSA
122050133 5273 Angiosperm View MSA
121350826 5274 Embryophyte View MSA
123427153 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.116        
cufflinks 6.665        
cufflinks 1.205        
cufflinks 9.055       High
cufflinks 0.741       Low
cufflinks 3.034        

0 Strain