Gene : AT1G49490 A. thaliana TAIR10
Defline:  Leucine-rich repeat (LRR) family protein Genomic Order:  3976
Name:  ? AT1G49490 Secondary Identifier:  ? PAC:19649443
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G49490 0.5kb upstream 0.5kb upstream 3044 true Chr1: 18317563-18320606 Arabidopsis thaliana
AT1G49490 0.5kb upstream 0.5kb upstream 500 false Chr1: 18320107-18320606 Arabidopsis thaliana
AT1G49490 0.5kb downstream 0.5kb downstream 3044 true Chr1: 18317063-18320106 Arabidopsis thaliana
AT1G49490 0.5kb downstream 0.5kb downstream 500 false Chr1: 18317063-18317562 Arabidopsis thaliana
AT1G49490 1.0kb upstream 1.0kb upstream 3544 true Chr1: 18317563-18321106 Arabidopsis thaliana
AT1G49490 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18320107-18321106 Arabidopsis thaliana
AT1G49490 1.0kb downstream 1.0kb downstream 3544 true Chr1: 18316563-18320106 Arabidopsis thaliana
AT1G49490 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18316563-18317562 Arabidopsis thaliana
AT1G49490 2.0kb upstream 2.0kb upstream 4544 true Chr1: 18317563-18322106 Arabidopsis thaliana
AT1G49490 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18320107-18322106 Arabidopsis thaliana
AT1G49490 2.0kb downstream 2.0kb downstream 4544 true Chr1: 18315563-18320106 Arabidopsis thaliana
AT1G49490 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18315563-18317562 Arabidopsis thaliana
AT1G49490 5.0kb upstream 5.0kb upstream 7544 true Chr1: 18317563-18325106 Arabidopsis thaliana
AT1G49490 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18320107-18325106 Arabidopsis thaliana
AT1G49490 5.0kb downstream 5.0kb downstream 7544 true Chr1: 18312563-18320106 Arabidopsis thaliana
AT1G49490 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18312563-18317562 Arabidopsis thaliana
AT1G49490 10.0kb upstream 10.0kb upstream 12544 true Chr1: 18317563-18330106 Arabidopsis thaliana
AT1G49490 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18320107-18330106 Arabidopsis thaliana
AT1G49490 10.0kb downstream 10.0kb downstream 12544 true Chr1: 18307563-18320106 Arabidopsis thaliana
AT1G49490 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18307563-18317562 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380321 5261 Brassicaceae View MSA
123841495 5264 Brassicales-Malvales View MSA
124351661 5266 SBM View MSA
124254554 5268 Malvidae View MSA
124074520 5270 Rosid View MSA
123751287 5271 Pentapetalae View MSA
122794768 5272 Eudicot View MSA
122048760 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121349764 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.329       Low
cufflinks 0.377        
cufflinks 0.753       High
cufflinks 0.503        
cufflinks 0.522        
cufflinks 0.409        

0 Strain