Gene : AT1G49170 A. thaliana TAIR10
Defline:  (1 of 1) PTHR13420//PTHR13420:SF7 - UNCHARACTERIZED // UPF0235 PROTEIN C15ORF40 Genomic Order:  3944
Name:  ? AT1G49170 Secondary Identifier:  ? PAC:19653779
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G49170 0.5kb upstream 0.5kb upstream 1678 true Chr1: 18183266-18184943 Arabidopsis thaliana
AT1G49170 0.5kb upstream 0.5kb upstream 500 false Chr1: 18184444-18184943 Arabidopsis thaliana
AT1G49170 0.5kb downstream 0.5kb downstream 1678 true Chr1: 18182766-18184443 Arabidopsis thaliana
AT1G49170 0.5kb downstream 0.5kb downstream 500 false Chr1: 18182766-18183265 Arabidopsis thaliana
AT1G49170 1.0kb upstream 1.0kb upstream 2178 true Chr1: 18183266-18185443 Arabidopsis thaliana
AT1G49170 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18184444-18185443 Arabidopsis thaliana
AT1G49170 1.0kb downstream 1.0kb downstream 2178 true Chr1: 18182266-18184443 Arabidopsis thaliana
AT1G49170 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18182266-18183265 Arabidopsis thaliana
AT1G49170 2.0kb upstream 2.0kb upstream 3178 true Chr1: 18183266-18186443 Arabidopsis thaliana
AT1G49170 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18184444-18186443 Arabidopsis thaliana
AT1G49170 2.0kb downstream 2.0kb downstream 3178 true Chr1: 18181266-18184443 Arabidopsis thaliana
AT1G49170 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18181266-18183265 Arabidopsis thaliana
AT1G49170 5.0kb upstream 5.0kb upstream 6178 true Chr1: 18183266-18189443 Arabidopsis thaliana
AT1G49170 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18184444-18189443 Arabidopsis thaliana
AT1G49170 5.0kb downstream 5.0kb downstream 6178 true Chr1: 18178266-18184443 Arabidopsis thaliana
AT1G49170 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18178266-18183265 Arabidopsis thaliana
AT1G49170 10.0kb upstream 10.0kb upstream 11178 true Chr1: 18183266-18194443 Arabidopsis thaliana
AT1G49170 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18184444-18194443 Arabidopsis thaliana
AT1G49170 10.0kb downstream 10.0kb downstream 11178 true Chr1: 18173266-18184443 Arabidopsis thaliana
AT1G49170 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18173266-18183265 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372410 5261 Brassicaceae View MSA
123829413 5264 Brassicales-Malvales View MSA
124346620 5266 SBM View MSA
124242813 5268 Malvidae View MSA
124061245 5270 Rosid View MSA
123752892 5271 Pentapetalae View MSA
122790318 5272 Eudicot View MSA
122046724 5273 Angiosperm View MSA
121347959 5274 Embryophyte View MSA
123423816 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.587        
cufflinks 7.687       High
cufflinks 3.853       Low
cufflinks 6.357        
cufflinks 4.807        
cufflinks 4.89        

0 Strain