Gene : AT1G49250 A. thaliana TAIR10
Defline:  (1 of 2) K10747 - DNA ligase 1 (LIG1) Genomic Order:  3953
Name:  ? AT1G49250 Secondary Identifier:  ? PAC:19652823
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G49250 0.5kb upstream 0.5kb upstream 4224 true Chr1: 18220033-18224256 Arabidopsis thaliana
AT1G49250 0.5kb upstream 0.5kb upstream 500 false Chr1: 18220033-18220532 Arabidopsis thaliana
AT1G49250 0.5kb downstream 0.5kb downstream 4224 true Chr1: 18220533-18224756 Arabidopsis thaliana
AT1G49250 0.5kb downstream 0.5kb downstream 500 false Chr1: 18224257-18224756 Arabidopsis thaliana
AT1G49250 1.0kb upstream 1.0kb upstream 4724 true Chr1: 18219533-18224256 Arabidopsis thaliana
AT1G49250 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18219533-18220532 Arabidopsis thaliana
AT1G49250 1.0kb downstream 1.0kb downstream 4724 true Chr1: 18220533-18225256 Arabidopsis thaliana
AT1G49250 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18224257-18225256 Arabidopsis thaliana
AT1G49250 2.0kb upstream 2.0kb upstream 5724 true Chr1: 18218533-18224256 Arabidopsis thaliana
AT1G49250 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18218533-18220532 Arabidopsis thaliana
AT1G49250 2.0kb downstream 2.0kb downstream 5724 true Chr1: 18220533-18226256 Arabidopsis thaliana
AT1G49250 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18224257-18226256 Arabidopsis thaliana
AT1G49250 5.0kb upstream 5.0kb upstream 8724 true Chr1: 18215533-18224256 Arabidopsis thaliana
AT1G49250 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18215533-18220532 Arabidopsis thaliana
AT1G49250 5.0kb downstream 5.0kb downstream 8724 true Chr1: 18220533-18229256 Arabidopsis thaliana
AT1G49250 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18224257-18229256 Arabidopsis thaliana
AT1G49250 10.0kb upstream 10.0kb upstream 13724 true Chr1: 18210533-18224256 Arabidopsis thaliana
AT1G49250 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18210533-18220532 Arabidopsis thaliana
AT1G49250 10.0kb downstream 10.0kb downstream 13724 true Chr1: 18220533-18234256 Arabidopsis thaliana
AT1G49250 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18224257-18234256 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122328608 5261 Brassicaceae Singleton cluster - no MSA
123769952 5264 Brassicales-Malvales Singleton cluster - no MSA
124268502 5266 SBM Singleton cluster - no MSA
124124700 5268 Malvidae Singleton cluster - no MSA
123853712 5270 Rosid Singleton cluster - no MSA
123746296 5271 Pentapetalae View MSA
122793355 5272 Eudicot View MSA
122047557 5273 Angiosperm View MSA
121348285 5274 Embryophyte View MSA
123426430 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.004     Low Low
cufflinks 0.036     Low  
cufflinks 0.004     Low Low
cufflinks 0.037     Low  
cufflinks 0.009     Low  
cufflinks 0.026     Low  

0 Strain