Gene : EMB1144 A. thaliana TAIR10
Primary Identifier:  ? AT1G48850 Defline:  (1 of 1) 4.2.3.5 - Chorismate synthase / 5-enolpyruvylshikimate-3-phosphate phospholyase
Genomic Order:  3913 Name:  ? AT1G48850
Secondary Identifier:  ? PAC:19653840
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana ARO-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-6163 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G48850 0.5kb upstream 0.5kb upstream 3686 true Chr1: 18064905-18068590 Arabidopsis thaliana
AT1G48850 0.5kb upstream 0.5kb upstream 500 false Chr1: 18068091-18068590 Arabidopsis thaliana
AT1G48850 0.5kb downstream 0.5kb downstream 3686 true Chr1: 18064405-18068090 Arabidopsis thaliana
AT1G48850 0.5kb downstream 0.5kb downstream 500 false Chr1: 18064405-18064904 Arabidopsis thaliana
AT1G48850 1.0kb upstream 1.0kb upstream 4186 true Chr1: 18064905-18069090 Arabidopsis thaliana
AT1G48850 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18068091-18069090 Arabidopsis thaliana
AT1G48850 1.0kb downstream 1.0kb downstream 4186 true Chr1: 18063905-18068090 Arabidopsis thaliana
AT1G48850 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18063905-18064904 Arabidopsis thaliana
AT1G48850 2.0kb upstream 2.0kb upstream 5186 true Chr1: 18064905-18070090 Arabidopsis thaliana
AT1G48850 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18068091-18070090 Arabidopsis thaliana
AT1G48850 2.0kb downstream 2.0kb downstream 5186 true Chr1: 18062905-18068090 Arabidopsis thaliana
AT1G48850 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18062905-18064904 Arabidopsis thaliana
AT1G48850 5.0kb upstream 5.0kb upstream 8186 true Chr1: 18064905-18073090 Arabidopsis thaliana
AT1G48850 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18068091-18073090 Arabidopsis thaliana
AT1G48850 5.0kb downstream 5.0kb downstream 8186 true Chr1: 18059905-18068090 Arabidopsis thaliana
AT1G48850 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18059905-18064904 Arabidopsis thaliana
AT1G48850 10.0kb upstream 10.0kb upstream 13186 true Chr1: 18064905-18078090 Arabidopsis thaliana
AT1G48850 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18068091-18078090 Arabidopsis thaliana
AT1G48850 10.0kb downstream 10.0kb downstream 13186 true Chr1: 18054905-18068090 Arabidopsis thaliana
AT1G48850 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18054905-18064904 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041230 5273 Angiosperm View MSA
122374629 5261 Brassicaceae View MSA
123827910 5264 Brassicales-Malvales View MSA
124346296 5266 SBM View MSA
124238630 5268 Malvidae View MSA
124061876 5270 Rosid View MSA
123747909 5271 Pentapetalae View MSA
122787011 5272 Eudicot View MSA
121346403 5274 Embryophyte View MSA
123428194 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.025        
cufflinks 10.32        
cufflinks 7.44       Low
cufflinks 12.918       High
cufflinks 7.782        
cufflinks 13.601       High

0 Strain