Gene : AT1G48770 A. thaliana TAIR10
Defline:  (1 of 9) PF07797 - Protein of unknown function (DUF1639) (DUF1639) Genomic Order:  3906
Name:  ? AT1G48770 Secondary Identifier:  ? PAC:19652480
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G48770 0.5kb upstream 0.5kb upstream 1132 true Chr1: 18039785-18040916 Arabidopsis thaliana
AT1G48770 0.5kb upstream 0.5kb upstream 500 false Chr1: 18039785-18040284 Arabidopsis thaliana
AT1G48770 0.5kb downstream 0.5kb downstream 1132 true Chr1: 18040285-18041416 Arabidopsis thaliana
AT1G48770 0.5kb downstream 0.5kb downstream 500 false Chr1: 18040917-18041416 Arabidopsis thaliana
AT1G48770 1.0kb upstream 1.0kb upstream 1632 true Chr1: 18039285-18040916 Arabidopsis thaliana
AT1G48770 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18039285-18040284 Arabidopsis thaliana
AT1G48770 1.0kb downstream 1.0kb downstream 1632 true Chr1: 18040285-18041916 Arabidopsis thaliana
AT1G48770 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18040917-18041916 Arabidopsis thaliana
AT1G48770 2.0kb upstream 2.0kb upstream 2632 true Chr1: 18038285-18040916 Arabidopsis thaliana
AT1G48770 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18038285-18040284 Arabidopsis thaliana
AT1G48770 2.0kb downstream 2.0kb downstream 2632 true Chr1: 18040285-18042916 Arabidopsis thaliana
AT1G48770 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18040917-18042916 Arabidopsis thaliana
AT1G48770 5.0kb upstream 5.0kb upstream 5632 true Chr1: 18035285-18040916 Arabidopsis thaliana
AT1G48770 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18035285-18040284 Arabidopsis thaliana
AT1G48770 5.0kb downstream 5.0kb downstream 5632 true Chr1: 18040285-18045916 Arabidopsis thaliana
AT1G48770 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18040917-18045916 Arabidopsis thaliana
AT1G48770 10.0kb upstream 10.0kb upstream 10632 true Chr1: 18030285-18040916 Arabidopsis thaliana
AT1G48770 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18030285-18040284 Arabidopsis thaliana
AT1G48770 10.0kb downstream 10.0kb downstream 10632 true Chr1: 18040285-18050916 Arabidopsis thaliana
AT1G48770 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18040917-18050916 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380098 5261 Brassicaceae View MSA
123802559 5264 Brassicales-Malvales View MSA
124299746 5266 SBM View MSA
124151075 5268 Malvidae View MSA
124073267 5270 Rosid View MSA
123753733 5271 Pentapetalae View MSA
122792020 5272 Eudicot View MSA
122049023 5273 Angiosperm View MSA
121351496 5274 Embryophyte View MSA
123382191 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.675        
cufflinks 11.294        
cufflinks 4.559       Low
cufflinks 12.286       High
cufflinks 5.069        
cufflinks 9.857        

0 Strain