Gene : AT1G48540 A. thaliana TAIR10
Defline:  (1 of 2) PTHR15454:SF7 - SERINE/THREONINE-PROTEIN KINASE 11-INTERACTING PROTEIN Genomic Order:  3881
Name:  ? AT1G48540 Secondary Identifier:  ? PAC:19650430
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G48540 0.5kb upstream 0.5kb upstream 5646 true Chr1: 17944876-17950521 Arabidopsis thaliana
AT1G48540 0.5kb upstream 0.5kb upstream 500 false Chr1: 17944876-17945375 Arabidopsis thaliana
AT1G48540 0.5kb downstream 0.5kb downstream 5646 true Chr1: 17945376-17951021 Arabidopsis thaliana
AT1G48540 0.5kb downstream 0.5kb downstream 500 false Chr1: 17950522-17951021 Arabidopsis thaliana
AT1G48540 1.0kb upstream 1.0kb upstream 6146 true Chr1: 17944376-17950521 Arabidopsis thaliana
AT1G48540 1.0kb upstream 1.0kb upstream 1000 false Chr1: 17944376-17945375 Arabidopsis thaliana
AT1G48540 1.0kb downstream 1.0kb downstream 6146 true Chr1: 17945376-17951521 Arabidopsis thaliana
AT1G48540 1.0kb downstream 1.0kb downstream 1000 false Chr1: 17950522-17951521 Arabidopsis thaliana
AT1G48540 2.0kb upstream 2.0kb upstream 7146 true Chr1: 17943376-17950521 Arabidopsis thaliana
AT1G48540 2.0kb upstream 2.0kb upstream 2000 false Chr1: 17943376-17945375 Arabidopsis thaliana
AT1G48540 2.0kb downstream 2.0kb downstream 7146 true Chr1: 17945376-17952521 Arabidopsis thaliana
AT1G48540 2.0kb downstream 2.0kb downstream 2000 false Chr1: 17950522-17952521 Arabidopsis thaliana
AT1G48540 5.0kb upstream 5.0kb upstream 10146 true Chr1: 17940376-17950521 Arabidopsis thaliana
AT1G48540 5.0kb upstream 5.0kb upstream 5000 false Chr1: 17940376-17945375 Arabidopsis thaliana
AT1G48540 5.0kb downstream 5.0kb downstream 10146 true Chr1: 17945376-17955521 Arabidopsis thaliana
AT1G48540 5.0kb downstream 5.0kb downstream 5000 false Chr1: 17950522-17955521 Arabidopsis thaliana
AT1G48540 10.0kb upstream 10.0kb upstream 15146 true Chr1: 17935376-17950521 Arabidopsis thaliana
AT1G48540 10.0kb upstream 10.0kb upstream 10000 false Chr1: 17935376-17945375 Arabidopsis thaliana
AT1G48540 10.0kb downstream 10.0kb downstream 15146 true Chr1: 17945376-17960521 Arabidopsis thaliana
AT1G48540 10.0kb downstream 10.0kb downstream 10000 false Chr1: 17950522-17960521 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363316 5261 Brassicaceae View MSA
123836421 5264 Brassicales-Malvales View MSA
124337466 5266 SBM View MSA
124240168 5268 Malvidae View MSA
124068979 5270 Rosid View MSA
123746713 5271 Pentapetalae View MSA
122789922 5272 Eudicot View MSA
122043032 5273 Angiosperm View MSA
121348804 5274 Embryophyte View MSA
123427587 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.669       Low
cufflinks 5.882        
cufflinks 6.243       High
cufflinks 5.247        
cufflinks 5.523        
cufflinks 5.566        

0 Strain