Gene : AT1G48450 A. thaliana TAIR10
Defline:  (1 of 8) PF05542 - Protein of unknown function (DUF760) (DUF760) Genomic Order:  3872
Name:  ? AT1G48450 Secondary Identifier:  ? PAC:19655029
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G48450 0.5kb upstream 0.5kb upstream 2448 true Chr1: 17908503-17910950 Arabidopsis thaliana
AT1G48450 0.5kb upstream 0.5kb upstream 500 false Chr1: 17910451-17910950 Arabidopsis thaliana
AT1G48450 0.5kb downstream 0.5kb downstream 2448 true Chr1: 17908003-17910450 Arabidopsis thaliana
AT1G48450 0.5kb downstream 0.5kb downstream 500 false Chr1: 17908003-17908502 Arabidopsis thaliana
AT1G48450 1.0kb upstream 1.0kb upstream 2948 true Chr1: 17908503-17911450 Arabidopsis thaliana
AT1G48450 1.0kb upstream 1.0kb upstream 1000 false Chr1: 17910451-17911450 Arabidopsis thaliana
AT1G48450 1.0kb downstream 1.0kb downstream 2948 true Chr1: 17907503-17910450 Arabidopsis thaliana
AT1G48450 1.0kb downstream 1.0kb downstream 1000 false Chr1: 17907503-17908502 Arabidopsis thaliana
AT1G48450 2.0kb upstream 2.0kb upstream 3948 true Chr1: 17908503-17912450 Arabidopsis thaliana
AT1G48450 2.0kb upstream 2.0kb upstream 2000 false Chr1: 17910451-17912450 Arabidopsis thaliana
AT1G48450 2.0kb downstream 2.0kb downstream 3948 true Chr1: 17906503-17910450 Arabidopsis thaliana
AT1G48450 2.0kb downstream 2.0kb downstream 2000 false Chr1: 17906503-17908502 Arabidopsis thaliana
AT1G48450 5.0kb upstream 5.0kb upstream 6948 true Chr1: 17908503-17915450 Arabidopsis thaliana
AT1G48450 5.0kb upstream 5.0kb upstream 5000 false Chr1: 17910451-17915450 Arabidopsis thaliana
AT1G48450 5.0kb downstream 5.0kb downstream 6948 true Chr1: 17903503-17910450 Arabidopsis thaliana
AT1G48450 5.0kb downstream 5.0kb downstream 5000 false Chr1: 17903503-17908502 Arabidopsis thaliana
AT1G48450 10.0kb upstream 10.0kb upstream 11948 true Chr1: 17908503-17920450 Arabidopsis thaliana
AT1G48450 10.0kb upstream 10.0kb upstream 10000 false Chr1: 17910451-17920450 Arabidopsis thaliana
AT1G48450 10.0kb downstream 10.0kb downstream 11948 true Chr1: 17898503-17910450 Arabidopsis thaliana
AT1G48450 10.0kb downstream 10.0kb downstream 10000 false Chr1: 17898503-17908502 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373765 5261 Brassicaceae View MSA
123836185 5264 Brassicales-Malvales View MSA
124344586 5266 SBM View MSA
124241762 5268 Malvidae View MSA
124062530 5270 Rosid View MSA
123743837 5271 Pentapetalae View MSA
122792166 5272 Eudicot View MSA
122045353 5273 Angiosperm View MSA
121310438 5274 Embryophyte View MSA
123428654 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.91        
cufflinks 7.978        
cufflinks 26.208     High  
cufflinks 7.81        
cufflinks 23.789        
cufflinks 5.64       Low

0 Strain