Gene : RKL1 A. thaliana TAIR10

Primary Identifier:  ? AT1G48480 Defline:  (1 of 2) PTHR27008//PTHR27008:SF19 - FAMILY NOT NAMED // INACTIVE RECEPTOR KINASE RLK902-RELATED
Genomic Order:  3875 Name:  ? AT1G48480
Secondary Identifier:  ? PAC:19656224

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G48480 0.5kb upstream 0.5kb upstream 3095 true Chr1: 17917891-17920985 Arabidopsis thaliana
AT1G48480 0.5kb upstream 0.5kb upstream 500 false Chr1: 17917891-17918390 Arabidopsis thaliana
AT1G48480 0.5kb downstream 0.5kb downstream 3095 true Chr1: 17918391-17921485 Arabidopsis thaliana
AT1G48480 0.5kb downstream 0.5kb downstream 500 false Chr1: 17920986-17921485 Arabidopsis thaliana
AT1G48480 1.0kb upstream 1.0kb upstream 3595 true Chr1: 17917391-17920985 Arabidopsis thaliana
AT1G48480 1.0kb upstream 1.0kb upstream 1000 false Chr1: 17917391-17918390 Arabidopsis thaliana
AT1G48480 1.0kb downstream 1.0kb downstream 3595 true Chr1: 17918391-17921985 Arabidopsis thaliana
AT1G48480 1.0kb downstream 1.0kb downstream 1000 false Chr1: 17920986-17921985 Arabidopsis thaliana
AT1G48480 2.0kb upstream 2.0kb upstream 4595 true Chr1: 17916391-17920985 Arabidopsis thaliana
AT1G48480 2.0kb upstream 2.0kb upstream 2000 false Chr1: 17916391-17918390 Arabidopsis thaliana
AT1G48480 2.0kb downstream 2.0kb downstream 4595 true Chr1: 17918391-17922985 Arabidopsis thaliana
AT1G48480 2.0kb downstream 2.0kb downstream 2000 false Chr1: 17920986-17922985 Arabidopsis thaliana
AT1G48480 5.0kb upstream 5.0kb upstream 7595 true Chr1: 17913391-17920985 Arabidopsis thaliana
AT1G48480 5.0kb upstream 5.0kb upstream 5000 false Chr1: 17913391-17918390 Arabidopsis thaliana
AT1G48480 5.0kb downstream 5.0kb downstream 7595 true Chr1: 17918391-17925985 Arabidopsis thaliana
AT1G48480 5.0kb downstream 5.0kb downstream 5000 false Chr1: 17920986-17925985 Arabidopsis thaliana
AT1G48480 10.0kb upstream 10.0kb upstream 12595 true Chr1: 17908391-17920985 Arabidopsis thaliana
AT1G48480 10.0kb upstream 10.0kb upstream 10000 false Chr1: 17908391-17918390 Arabidopsis thaliana
AT1G48480 10.0kb downstream 10.0kb downstream 12595 true Chr1: 17918391-17930985 Arabidopsis thaliana
AT1G48480 10.0kb downstream 10.0kb downstream 10000 false Chr1: 17920986-17930985 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365311 5261 Brassicaceae View MSA
123833811 5264 Brassicales-Malvales View MSA
124345209 5266 SBM View MSA
124247950 5268 Malvidae View MSA
124065408 5270 Rosid View MSA
123744747 5271 Pentapetalae View MSA
122793845 5272 Eudicot View MSA
122043676 5273 Angiosperm View MSA
121310166 5274 Embryophyte View MSA
123347732 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.96        
cufflinks 15.949        
cufflinks 9.968        
cufflinks 16.133        
cufflinks 7.702       Low
cufflinks 21.621        

0 Strain