Gene : AGO1 A. thaliana TAIR10
Primary Identifier:  ? AT1G48410 Defline:  (1 of 1) PTHR22891//PTHR22891:SF34 - EUKARYOTIC TRANSLATION INITIATION FACTOR 2C // SUBFAMILY NOT NAMED
Genomic Order:  3868 Name:  ? AT1G48410
Secondary Identifier:  ? PAC:19649917
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G48410 0.5kb upstream 0.5kb upstream 7464 true Chr1: 17885633-17893096 Arabidopsis thaliana
AT1G48410 0.5kb upstream 0.5kb upstream 500 false Chr1: 17892597-17893096 Arabidopsis thaliana
AT1G48410 0.5kb downstream 0.5kb downstream 7464 true Chr1: 17885133-17892596 Arabidopsis thaliana
AT1G48410 0.5kb downstream 0.5kb downstream 500 false Chr1: 17885133-17885632 Arabidopsis thaliana
AT1G48410 1.0kb upstream 1.0kb upstream 7964 true Chr1: 17885633-17893596 Arabidopsis thaliana
AT1G48410 1.0kb upstream 1.0kb upstream 1000 false Chr1: 17892597-17893596 Arabidopsis thaliana
AT1G48410 1.0kb downstream 1.0kb downstream 7964 true Chr1: 17884633-17892596 Arabidopsis thaliana
AT1G48410 1.0kb downstream 1.0kb downstream 1000 false Chr1: 17884633-17885632 Arabidopsis thaliana
AT1G48410 2.0kb upstream 2.0kb upstream 8964 true Chr1: 17885633-17894596 Arabidopsis thaliana
AT1G48410 2.0kb upstream 2.0kb upstream 2000 false Chr1: 17892597-17894596 Arabidopsis thaliana
AT1G48410 2.0kb downstream 2.0kb downstream 8964 true Chr1: 17883633-17892596 Arabidopsis thaliana
AT1G48410 2.0kb downstream 2.0kb downstream 2000 false Chr1: 17883633-17885632 Arabidopsis thaliana
AT1G48410 5.0kb upstream 5.0kb upstream 11964 true Chr1: 17885633-17897596 Arabidopsis thaliana
AT1G48410 5.0kb upstream 5.0kb upstream 5000 false Chr1: 17892597-17897596 Arabidopsis thaliana
AT1G48410 5.0kb downstream 5.0kb downstream 11964 true Chr1: 17880633-17892596 Arabidopsis thaliana
AT1G48410 5.0kb downstream 5.0kb downstream 5000 false Chr1: 17880633-17885632 Arabidopsis thaliana
AT1G48410 10.0kb upstream 10.0kb upstream 16964 true Chr1: 17885633-17902596 Arabidopsis thaliana
AT1G48410 10.0kb upstream 10.0kb upstream 10000 false Chr1: 17892597-17902596 Arabidopsis thaliana
AT1G48410 10.0kb downstream 10.0kb downstream 16964 true Chr1: 17875633-17892596 Arabidopsis thaliana
AT1G48410 10.0kb downstream 10.0kb downstream 10000 false Chr1: 17875633-17885632 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369190 5261 Brassicaceae View MSA
123839246 5264 Brassicales-Malvales View MSA
124338199 5266 SBM View MSA
124237712 5268 Malvidae View MSA
124062634 5270 Rosid View MSA
123738566 5271 Pentapetalae View MSA
122790150 5272 Eudicot View MSA
122045279 5273 Angiosperm View MSA
121345149 5274 Embryophyte View MSA
123428465 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.507        
cufflinks 16.264        
cufflinks 7.815       Low
cufflinks 19.429       High
cufflinks 9.489        
cufflinks 17.88        

0 Strain