Gene : AT1G47900 A. thaliana TAIR10
Defline:  (1 of 4) PTHR31580//PTHR31580:SF4 - FAMILY NOT NAMED // FILAMENT-LIKE PLANT PROTEIN 4-RELATED Genomic Order:  3816
Name:  ? AT1G47900 Secondary Identifier:  ? PAC:19649237
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G47900 0.5kb upstream 0.5kb upstream 4782 true Chr1: 17647144-17651925 Arabidopsis thaliana
AT1G47900 0.5kb upstream 0.5kb upstream 500 false Chr1: 17651426-17651925 Arabidopsis thaliana
AT1G47900 0.5kb downstream 0.5kb downstream 4782 true Chr1: 17646644-17651425 Arabidopsis thaliana
AT1G47900 0.5kb downstream 0.5kb downstream 500 false Chr1: 17646644-17647143 Arabidopsis thaliana
AT1G47900 1.0kb upstream 1.0kb upstream 5282 true Chr1: 17647144-17652425 Arabidopsis thaliana
AT1G47900 1.0kb upstream 1.0kb upstream 1000 false Chr1: 17651426-17652425 Arabidopsis thaliana
AT1G47900 1.0kb downstream 1.0kb downstream 5282 true Chr1: 17646144-17651425 Arabidopsis thaliana
AT1G47900 1.0kb downstream 1.0kb downstream 1000 false Chr1: 17646144-17647143 Arabidopsis thaliana
AT1G47900 2.0kb upstream 2.0kb upstream 6282 true Chr1: 17647144-17653425 Arabidopsis thaliana
AT1G47900 2.0kb upstream 2.0kb upstream 2000 false Chr1: 17651426-17653425 Arabidopsis thaliana
AT1G47900 2.0kb downstream 2.0kb downstream 6282 true Chr1: 17645144-17651425 Arabidopsis thaliana
AT1G47900 2.0kb downstream 2.0kb downstream 2000 false Chr1: 17645144-17647143 Arabidopsis thaliana
AT1G47900 5.0kb upstream 5.0kb upstream 9282 true Chr1: 17647144-17656425 Arabidopsis thaliana
AT1G47900 5.0kb upstream 5.0kb upstream 5000 false Chr1: 17651426-17656425 Arabidopsis thaliana
AT1G47900 5.0kb downstream 5.0kb downstream 9282 true Chr1: 17642144-17651425 Arabidopsis thaliana
AT1G47900 5.0kb downstream 5.0kb downstream 5000 false Chr1: 17642144-17647143 Arabidopsis thaliana
AT1G47900 10.0kb upstream 10.0kb upstream 14282 true Chr1: 17647144-17661425 Arabidopsis thaliana
AT1G47900 10.0kb upstream 10.0kb upstream 10000 false Chr1: 17651426-17661425 Arabidopsis thaliana
AT1G47900 10.0kb downstream 10.0kb downstream 14282 true Chr1: 17637144-17651425 Arabidopsis thaliana
AT1G47900 10.0kb downstream 10.0kb downstream 10000 false Chr1: 17637144-17647143 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373241 5261 Brassicaceae View MSA
123841089 5264 Brassicales-Malvales View MSA
124343688 5266 SBM View MSA
124252265 5268 Malvidae View MSA
124071208 5270 Rosid View MSA
123744049 5271 Pentapetalae View MSA
122790238 5272 Eudicot View MSA
122044251 5273 Angiosperm View MSA
121351576 5274 Embryophyte View MSA
123428094 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.483        
cufflinks 8.564        
cufflinks 3.16        
cufflinks 8.132        
cufflinks 2.519       Low
cufflinks 9.706       High

0 Strain