Gene : KU80 A. thaliana TAIR10
Primary Identifier:  ? AT1G48050 Defline:  (1 of 1) K10885 - ATP-dependent DNA helicase 2 subunit 2 (XRCC5, KU80, G22P2)
Genomic Order:  3830 Name:  ? AT1G48050
Secondary Identifier:  ? PAC:19650332
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G48050 0.5kb upstream 0.5kb upstream 4092 true Chr1: 17722952-17727043 Arabidopsis thaliana
AT1G48050 0.5kb upstream 0.5kb upstream 500 false Chr1: 17722952-17723451 Arabidopsis thaliana
AT1G48050 0.5kb downstream 0.5kb downstream 4092 true Chr1: 17723452-17727543 Arabidopsis thaliana
AT1G48050 0.5kb downstream 0.5kb downstream 500 false Chr1: 17727044-17727543 Arabidopsis thaliana
AT1G48050 1.0kb upstream 1.0kb upstream 4592 true Chr1: 17722452-17727043 Arabidopsis thaliana
AT1G48050 1.0kb upstream 1.0kb upstream 1000 false Chr1: 17722452-17723451 Arabidopsis thaliana
AT1G48050 1.0kb downstream 1.0kb downstream 4592 true Chr1: 17723452-17728043 Arabidopsis thaliana
AT1G48050 1.0kb downstream 1.0kb downstream 1000 false Chr1: 17727044-17728043 Arabidopsis thaliana
AT1G48050 2.0kb upstream 2.0kb upstream 5592 true Chr1: 17721452-17727043 Arabidopsis thaliana
AT1G48050 2.0kb upstream 2.0kb upstream 2000 false Chr1: 17721452-17723451 Arabidopsis thaliana
AT1G48050 2.0kb downstream 2.0kb downstream 5592 true Chr1: 17723452-17729043 Arabidopsis thaliana
AT1G48050 2.0kb downstream 2.0kb downstream 2000 false Chr1: 17727044-17729043 Arabidopsis thaliana
AT1G48050 5.0kb upstream 5.0kb upstream 8592 true Chr1: 17718452-17727043 Arabidopsis thaliana
AT1G48050 5.0kb upstream 5.0kb upstream 5000 false Chr1: 17718452-17723451 Arabidopsis thaliana
AT1G48050 5.0kb downstream 5.0kb downstream 8592 true Chr1: 17723452-17732043 Arabidopsis thaliana
AT1G48050 5.0kb downstream 5.0kb downstream 5000 false Chr1: 17727044-17732043 Arabidopsis thaliana
AT1G48050 10.0kb upstream 10.0kb upstream 13592 true Chr1: 17713452-17727043 Arabidopsis thaliana
AT1G48050 10.0kb upstream 10.0kb upstream 10000 false Chr1: 17713452-17723451 Arabidopsis thaliana
AT1G48050 10.0kb downstream 10.0kb downstream 13592 true Chr1: 17723452-17737043 Arabidopsis thaliana
AT1G48050 10.0kb downstream 10.0kb downstream 10000 false Chr1: 17727044-17737043 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367560 5261 Brassicaceae View MSA
123832093 5264 Brassicales-Malvales View MSA
124346015 5266 SBM View MSA
124237954 5268 Malvidae View MSA
124065109 5270 Rosid View MSA
123746123 5271 Pentapetalae View MSA
122786375 5272 Eudicot View MSA
122050480 5273 Angiosperm View MSA
121345940 5274 Embryophyte View MSA
123427822 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.952        
cufflinks 7.574        
cufflinks 5.169       Low
cufflinks 7.924       High
cufflinks 5.168       Low
cufflinks 6.98        

0 Strain