Gene : AT1G43000 A. thaliana TAIR10
Defline:  (1 of 3) PTHR31065//PTHR31065:SF12 - FAMILY NOT NAMED // PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN Genomic Order:  3592
Name:  ? AT1G43000 Secondary Identifier:  ? PAC:19649886
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G43000 0.5kb upstream 0.5kb upstream 1340 true Chr1: 16140316-16141655 Arabidopsis thaliana
AT1G43000 0.5kb upstream 0.5kb upstream 500 false Chr1: 16140316-16140815 Arabidopsis thaliana
AT1G43000 0.5kb downstream 0.5kb downstream 1340 true Chr1: 16140816-16142155 Arabidopsis thaliana
AT1G43000 0.5kb downstream 0.5kb downstream 500 false Chr1: 16141656-16142155 Arabidopsis thaliana
AT1G43000 1.0kb upstream 1.0kb upstream 1840 true Chr1: 16139816-16141655 Arabidopsis thaliana
AT1G43000 1.0kb upstream 1.0kb upstream 1000 false Chr1: 16139816-16140815 Arabidopsis thaliana
AT1G43000 1.0kb downstream 1.0kb downstream 1840 true Chr1: 16140816-16142655 Arabidopsis thaliana
AT1G43000 1.0kb downstream 1.0kb downstream 1000 false Chr1: 16141656-16142655 Arabidopsis thaliana
AT1G43000 2.0kb upstream 2.0kb upstream 2840 true Chr1: 16138816-16141655 Arabidopsis thaliana
AT1G43000 2.0kb upstream 2.0kb upstream 2000 false Chr1: 16138816-16140815 Arabidopsis thaliana
AT1G43000 2.0kb downstream 2.0kb downstream 2840 true Chr1: 16140816-16143655 Arabidopsis thaliana
AT1G43000 2.0kb downstream 2.0kb downstream 2000 false Chr1: 16141656-16143655 Arabidopsis thaliana
AT1G43000 5.0kb upstream 5.0kb upstream 5840 true Chr1: 16135816-16141655 Arabidopsis thaliana
AT1G43000 5.0kb upstream 5.0kb upstream 5000 false Chr1: 16135816-16140815 Arabidopsis thaliana
AT1G43000 5.0kb downstream 5.0kb downstream 5840 true Chr1: 16140816-16146655 Arabidopsis thaliana
AT1G43000 5.0kb downstream 5.0kb downstream 5000 false Chr1: 16141656-16146655 Arabidopsis thaliana
AT1G43000 10.0kb upstream 10.0kb upstream 10840 true Chr1: 16130816-16141655 Arabidopsis thaliana
AT1G43000 10.0kb upstream 10.0kb upstream 10000 false Chr1: 16130816-16140815 Arabidopsis thaliana
AT1G43000 10.0kb downstream 10.0kb downstream 10840 true Chr1: 16140816-16151655 Arabidopsis thaliana
AT1G43000 10.0kb downstream 10.0kb downstream 10000 false Chr1: 16141656-16151655 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343715 5261 Brassicaceae View MSA
123783829 5264 Brassicales-Malvales View MSA
124282042 5266 SBM View MSA
124136703 5268 Malvidae View MSA
124069280 5270 Rosid View MSA
123750243 5271 Pentapetalae View MSA
122790111 5272 Eudicot View MSA
122049805 5273 Angiosperm View MSA
121349108 5274 Embryophyte View MSA
123428703 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.993       High
cufflinks 0.615        
cufflinks 0.382        
cufflinks 0.284     Low Low
cufflinks 0.647        
cufflinks 1.249        

0 Strain