Gene : FTSH12 A. thaliana TAIR10
Primary Identifier:  ? AT1G79560 Defline:  (1 of 1) PTHR23076:SF44 - ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 12, CHLOROPLASTIC
Genomic Order:  6933 Name:  ? AT1G79560
Secondary Identifier:  ? PAC:19652335
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0 Pathways

Genomics

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G79560 0.5kb upstream 0.5kb upstream 6292 true Chr1: 29926294-29932585 Arabidopsis thaliana
AT1G79560 0.5kb upstream 0.5kb upstream 500 false Chr1: 29926294-29926793 Arabidopsis thaliana
AT1G79560 0.5kb downstream 0.5kb downstream 6292 true Chr1: 29926794-29933085 Arabidopsis thaliana
AT1G79560 0.5kb downstream 0.5kb downstream 500 false Chr1: 29932586-29933085 Arabidopsis thaliana
AT1G79560 1.0kb upstream 1.0kb upstream 6792 true Chr1: 29925794-29932585 Arabidopsis thaliana
AT1G79560 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29925794-29926793 Arabidopsis thaliana
AT1G79560 1.0kb downstream 1.0kb downstream 6792 true Chr1: 29926794-29933585 Arabidopsis thaliana
AT1G79560 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29932586-29933585 Arabidopsis thaliana
AT1G79560 2.0kb upstream 2.0kb upstream 7792 true Chr1: 29924794-29932585 Arabidopsis thaliana
AT1G79560 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29924794-29926793 Arabidopsis thaliana
AT1G79560 2.0kb downstream 2.0kb downstream 7792 true Chr1: 29926794-29934585 Arabidopsis thaliana
AT1G79560 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29932586-29934585 Arabidopsis thaliana
AT1G79560 5.0kb upstream 5.0kb upstream 10792 true Chr1: 29921794-29932585 Arabidopsis thaliana
AT1G79560 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29921794-29926793 Arabidopsis thaliana
AT1G79560 5.0kb downstream 5.0kb downstream 10792 true Chr1: 29926794-29937585 Arabidopsis thaliana
AT1G79560 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29932586-29937585 Arabidopsis thaliana
AT1G79560 10.0kb upstream 10.0kb upstream 15792 true Chr1: 29916794-29932585 Arabidopsis thaliana
AT1G79560 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29916794-29926793 Arabidopsis thaliana
AT1G79560 10.0kb downstream 10.0kb downstream 15792 true Chr1: 29926794-29942585 Arabidopsis thaliana
AT1G79560 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29932586-29942585 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371021 5261 Brassicaceae View MSA
123832748 5264 Brassicales-Malvales View MSA
124338369 5266 SBM View MSA
124238329 5268 Malvidae View MSA
124065156 5270 Rosid View MSA
123736901 5271 Pentapetalae View MSA
122790141 5272 Eudicot View MSA
122047012 5273 Angiosperm View MSA
121345468 5274 Embryophyte View MSA
123380221 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.287        
cufflinks 5.832       Low
cufflinks 17.703       High
cufflinks 6.406        
cufflinks 14.681        
cufflinks 6.715        

0 Strain