Gene : AT1G34220 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12161//PTHR12161:SF21 - UNCHARACTERIZED DUF292 // REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN Genomic Order:  3378
Name:  ? AT1G34220 Secondary Identifier:  ? PAC:19657700
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G34220 0.5kb upstream 0.5kb upstream 3741 true Chr1: 12462849-12466589 Arabidopsis thaliana
AT1G34220 0.5kb upstream 0.5kb upstream 500 false Chr1: 12466090-12466589 Arabidopsis thaliana
AT1G34220 0.5kb downstream 0.5kb downstream 3741 true Chr1: 12462349-12466089 Arabidopsis thaliana
AT1G34220 0.5kb downstream 0.5kb downstream 500 false Chr1: 12462349-12462848 Arabidopsis thaliana
AT1G34220 1.0kb upstream 1.0kb upstream 4241 true Chr1: 12462849-12467089 Arabidopsis thaliana
AT1G34220 1.0kb upstream 1.0kb upstream 1000 false Chr1: 12466090-12467089 Arabidopsis thaliana
AT1G34220 1.0kb downstream 1.0kb downstream 4241 true Chr1: 12461849-12466089 Arabidopsis thaliana
AT1G34220 1.0kb downstream 1.0kb downstream 1000 false Chr1: 12461849-12462848 Arabidopsis thaliana
AT1G34220 2.0kb upstream 2.0kb upstream 5241 true Chr1: 12462849-12468089 Arabidopsis thaliana
AT1G34220 2.0kb upstream 2.0kb upstream 2000 false Chr1: 12466090-12468089 Arabidopsis thaliana
AT1G34220 2.0kb downstream 2.0kb downstream 5241 true Chr1: 12460849-12466089 Arabidopsis thaliana
AT1G34220 2.0kb downstream 2.0kb downstream 2000 false Chr1: 12460849-12462848 Arabidopsis thaliana
AT1G34220 5.0kb upstream 5.0kb upstream 8241 true Chr1: 12462849-12471089 Arabidopsis thaliana
AT1G34220 5.0kb upstream 5.0kb upstream 5000 false Chr1: 12466090-12471089 Arabidopsis thaliana
AT1G34220 5.0kb downstream 5.0kb downstream 8241 true Chr1: 12457849-12466089 Arabidopsis thaliana
AT1G34220 5.0kb downstream 5.0kb downstream 5000 false Chr1: 12457849-12462848 Arabidopsis thaliana
AT1G34220 10.0kb upstream 10.0kb upstream 13241 true Chr1: 12462849-12476089 Arabidopsis thaliana
AT1G34220 10.0kb upstream 10.0kb upstream 10000 false Chr1: 12466090-12476089 Arabidopsis thaliana
AT1G34220 10.0kb downstream 10.0kb downstream 13241 true Chr1: 12452849-12466089 Arabidopsis thaliana
AT1G34220 10.0kb downstream 10.0kb downstream 10000 false Chr1: 12452849-12462848 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366056 5261 Brassicaceae View MSA
123840797 5264 Brassicales-Malvales View MSA
124337965 5266 SBM View MSA
124245103 5268 Malvidae View MSA
124068076 5270 Rosid View MSA
123736868 5271 Pentapetalae View MSA
122789571 5272 Eudicot View MSA
122045314 5273 Angiosperm View MSA
121350449 5274 Embryophyte View MSA
123424640 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.523        
cufflinks 5.496        
cufflinks 4.443       Low
cufflinks 5.725        
cufflinks 5.35        
cufflinks 5.8        

0 Strain