Gene : AT1G21900 A. thaliana TAIR10
Defline:  (1 of 3) PTHR22811//PTHR22811:SF68 - TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  2211
Name:  ? AT1G21900 Secondary Identifier:  ? PAC:19652504
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G21900 0.5kb upstream 0.5kb upstream 2137 true Chr1: 7690802-7692938 Arabidopsis thaliana
AT1G21900 0.5kb upstream 0.5kb upstream 500 false Chr1: 7692439-7692938 Arabidopsis thaliana
AT1G21900 0.5kb downstream 0.5kb downstream 2137 true Chr1: 7690302-7692438 Arabidopsis thaliana
AT1G21900 0.5kb downstream 0.5kb downstream 500 false Chr1: 7690302-7690801 Arabidopsis thaliana
AT1G21900 1.0kb upstream 1.0kb upstream 2637 true Chr1: 7690802-7693438 Arabidopsis thaliana
AT1G21900 1.0kb upstream 1.0kb upstream 1000 false Chr1: 7692439-7693438 Arabidopsis thaliana
AT1G21900 1.0kb downstream 1.0kb downstream 2637 true Chr1: 7689802-7692438 Arabidopsis thaliana
AT1G21900 1.0kb downstream 1.0kb downstream 1000 false Chr1: 7689802-7690801 Arabidopsis thaliana
AT1G21900 2.0kb upstream 2.0kb upstream 3637 true Chr1: 7690802-7694438 Arabidopsis thaliana
AT1G21900 2.0kb upstream 2.0kb upstream 2000 false Chr1: 7692439-7694438 Arabidopsis thaliana
AT1G21900 2.0kb downstream 2.0kb downstream 3637 true Chr1: 7688802-7692438 Arabidopsis thaliana
AT1G21900 2.0kb downstream 2.0kb downstream 2000 false Chr1: 7688802-7690801 Arabidopsis thaliana
AT1G21900 5.0kb upstream 5.0kb upstream 6637 true Chr1: 7690802-7697438 Arabidopsis thaliana
AT1G21900 5.0kb upstream 5.0kb upstream 5000 false Chr1: 7692439-7697438 Arabidopsis thaliana
AT1G21900 5.0kb downstream 5.0kb downstream 6637 true Chr1: 7685802-7692438 Arabidopsis thaliana
AT1G21900 5.0kb downstream 5.0kb downstream 5000 false Chr1: 7685802-7690801 Arabidopsis thaliana
AT1G21900 10.0kb upstream 10.0kb upstream 11637 true Chr1: 7690802-7702438 Arabidopsis thaliana
AT1G21900 10.0kb upstream 10.0kb upstream 10000 false Chr1: 7692439-7702438 Arabidopsis thaliana
AT1G21900 10.0kb downstream 10.0kb downstream 11637 true Chr1: 7680802-7692438 Arabidopsis thaliana
AT1G21900 10.0kb downstream 10.0kb downstream 10000 false Chr1: 7680802-7690801 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366684 5261 Brassicaceae View MSA
123827630 5264 Brassicales-Malvales View MSA
124321475 5266 SBM View MSA
124239138 5268 Malvidae View MSA
124065325 5270 Rosid View MSA
123743210 5271 Pentapetalae View MSA
122786619 5272 Eudicot View MSA
122045643 5273 Angiosperm View MSA
121349336 5274 Embryophyte View MSA
123428181 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.896     High High
cufflinks 20.543        
cufflinks 16.245       Low
cufflinks 21.17        
cufflinks 17.995        
cufflinks 20.084        

0 Strain