Gene : SWI3C A. thaliana TAIR10
Primary Identifier:  ? AT1G21700 Defline:  (1 of 1) PTHR12802:SF41 - BRAHMA ASSOCIATED PROTEIN 155 KDA
Genomic Order:  2188 Name:  ? AT1G21700
Secondary Identifier:  ? PAC:19654703
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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G21700 0.5kb upstream 0.5kb upstream 4636 true Chr1: 7620001-7624636 Arabidopsis thaliana
AT1G21700 0.5kb upstream 0.5kb upstream 500 false Chr1: 7624137-7624636 Arabidopsis thaliana
AT1G21700 0.5kb downstream 0.5kb downstream 4636 true Chr1: 7619501-7624136 Arabidopsis thaliana
AT1G21700 0.5kb downstream 0.5kb downstream 500 false Chr1: 7619501-7620000 Arabidopsis thaliana
AT1G21700 1.0kb upstream 1.0kb upstream 5136 true Chr1: 7620001-7625136 Arabidopsis thaliana
AT1G21700 1.0kb upstream 1.0kb upstream 1000 false Chr1: 7624137-7625136 Arabidopsis thaliana
AT1G21700 1.0kb downstream 1.0kb downstream 5136 true Chr1: 7619001-7624136 Arabidopsis thaliana
AT1G21700 1.0kb downstream 1.0kb downstream 1000 false Chr1: 7619001-7620000 Arabidopsis thaliana
AT1G21700 2.0kb upstream 2.0kb upstream 6136 true Chr1: 7620001-7626136 Arabidopsis thaliana
AT1G21700 2.0kb upstream 2.0kb upstream 2000 false Chr1: 7624137-7626136 Arabidopsis thaliana
AT1G21700 2.0kb downstream 2.0kb downstream 6136 true Chr1: 7618001-7624136 Arabidopsis thaliana
AT1G21700 2.0kb downstream 2.0kb downstream 2000 false Chr1: 7618001-7620000 Arabidopsis thaliana
AT1G21700 5.0kb upstream 5.0kb upstream 9136 true Chr1: 7620001-7629136 Arabidopsis thaliana
AT1G21700 5.0kb upstream 5.0kb upstream 5000 false Chr1: 7624137-7629136 Arabidopsis thaliana
AT1G21700 5.0kb downstream 5.0kb downstream 9136 true Chr1: 7615001-7624136 Arabidopsis thaliana
AT1G21700 5.0kb downstream 5.0kb downstream 5000 false Chr1: 7615001-7620000 Arabidopsis thaliana
AT1G21700 10.0kb upstream 10.0kb upstream 14136 true Chr1: 7620001-7634136 Arabidopsis thaliana
AT1G21700 10.0kb upstream 10.0kb upstream 10000 false Chr1: 7624137-7634136 Arabidopsis thaliana
AT1G21700 10.0kb downstream 10.0kb downstream 14136 true Chr1: 7610001-7624136 Arabidopsis thaliana
AT1G21700 10.0kb downstream 10.0kb downstream 10000 false Chr1: 7610001-7620000 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369799 5261 Brassicaceae View MSA
123833513 5264 Brassicales-Malvales View MSA
124343338 5266 SBM View MSA
124250991 5268 Malvidae View MSA
124050406 5270 Rosid View MSA
123746248 5271 Pentapetalae View MSA
122789613 5272 Eudicot View MSA
122042836 5273 Angiosperm View MSA
121349137 5274 Embryophyte View MSA
123428437 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.214        
cufflinks 10.119        
cufflinks 5.842       Low
cufflinks 11.292        
cufflinks 7.05        
cufflinks 11.069        

0 Strain