Gene : AT1G21400 A. thaliana TAIR10
Defline:  (1 of 3) K00166 - 2-oxoisovalerate dehydrogenase E1 component alpha subunit (BCKDHA, bkdA1) Genomic Order:  2157
Name:  ? AT1G21400 Secondary Identifier:  ? PAC:19655945
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5046 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G21400 0.5kb upstream 0.5kb upstream 3785 true Chr1: 7492926-7496710 Arabidopsis thaliana
AT1G21400 0.5kb upstream 0.5kb upstream 500 false Chr1: 7492926-7493425 Arabidopsis thaliana
AT1G21400 0.5kb downstream 0.5kb downstream 3785 true Chr1: 7493426-7497210 Arabidopsis thaliana
AT1G21400 0.5kb downstream 0.5kb downstream 500 false Chr1: 7496711-7497210 Arabidopsis thaliana
AT1G21400 1.0kb upstream 1.0kb upstream 4285 true Chr1: 7492426-7496710 Arabidopsis thaliana
AT1G21400 1.0kb upstream 1.0kb upstream 1000 false Chr1: 7492426-7493425 Arabidopsis thaliana
AT1G21400 1.0kb downstream 1.0kb downstream 4285 true Chr1: 7493426-7497710 Arabidopsis thaliana
AT1G21400 1.0kb downstream 1.0kb downstream 1000 false Chr1: 7496711-7497710 Arabidopsis thaliana
AT1G21400 2.0kb upstream 2.0kb upstream 5285 true Chr1: 7491426-7496710 Arabidopsis thaliana
AT1G21400 2.0kb upstream 2.0kb upstream 2000 false Chr1: 7491426-7493425 Arabidopsis thaliana
AT1G21400 2.0kb downstream 2.0kb downstream 5285 true Chr1: 7493426-7498710 Arabidopsis thaliana
AT1G21400 2.0kb downstream 2.0kb downstream 2000 false Chr1: 7496711-7498710 Arabidopsis thaliana
AT1G21400 5.0kb upstream 5.0kb upstream 8285 true Chr1: 7488426-7496710 Arabidopsis thaliana
AT1G21400 5.0kb upstream 5.0kb upstream 5000 false Chr1: 7488426-7493425 Arabidopsis thaliana
AT1G21400 5.0kb downstream 5.0kb downstream 8285 true Chr1: 7493426-7501710 Arabidopsis thaliana
AT1G21400 5.0kb downstream 5.0kb downstream 5000 false Chr1: 7496711-7501710 Arabidopsis thaliana
AT1G21400 10.0kb upstream 10.0kb upstream 13285 true Chr1: 7483426-7496710 Arabidopsis thaliana
AT1G21400 10.0kb upstream 10.0kb upstream 10000 false Chr1: 7483426-7493425 Arabidopsis thaliana
AT1G21400 10.0kb downstream 10.0kb downstream 13285 true Chr1: 7493426-7506710 Arabidopsis thaliana
AT1G21400 10.0kb downstream 10.0kb downstream 10000 false Chr1: 7496711-7506710 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377984 5261 Brassicaceae View MSA
123832958 5264 Brassicales-Malvales View MSA
124348231 5266 SBM View MSA
124244585 5268 Malvidae View MSA
124064753 5270 Rosid View MSA
123750640 5271 Pentapetalae View MSA
122791863 5272 Eudicot View MSA
122044172 5273 Angiosperm View MSA
121346270 5274 Embryophyte View MSA
123428672 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.052        
cufflinks 1.784        
cufflinks 27.007     High  
cufflinks 2.661        
cufflinks 35.9     High High
cufflinks 0.88       Low

0 Strain