Gene : CAT1 A. thaliana TAIR10
Primary Identifier:  ? AT1G20630 Defline:  (1 of 3) 1.11.1.6 - Catalase
Genomic Order:  2075 Name:  ? AT1G20630
Secondary Identifier:  ? PAC:19651577
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana DETOX1-PWY Arabidopsis thaliana pathologic  
Athaliana DETOX1-PWY-1 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G20630 0.5kb upstream 0.5kb upstream 3842 true Chr1: 7146136-7149977 Arabidopsis thaliana
AT1G20630 0.5kb upstream 0.5kb upstream 500 false Chr1: 7146136-7146635 Arabidopsis thaliana
AT1G20630 0.5kb downstream 0.5kb downstream 3842 true Chr1: 7146636-7150477 Arabidopsis thaliana
AT1G20630 0.5kb downstream 0.5kb downstream 500 false Chr1: 7149978-7150477 Arabidopsis thaliana
AT1G20630 1.0kb upstream 1.0kb upstream 4342 true Chr1: 7145636-7149977 Arabidopsis thaliana
AT1G20630 1.0kb upstream 1.0kb upstream 1000 false Chr1: 7145636-7146635 Arabidopsis thaliana
AT1G20630 1.0kb downstream 1.0kb downstream 4342 true Chr1: 7146636-7150977 Arabidopsis thaliana
AT1G20630 1.0kb downstream 1.0kb downstream 1000 false Chr1: 7149978-7150977 Arabidopsis thaliana
AT1G20630 2.0kb upstream 2.0kb upstream 5342 true Chr1: 7144636-7149977 Arabidopsis thaliana
AT1G20630 2.0kb upstream 2.0kb upstream 2000 false Chr1: 7144636-7146635 Arabidopsis thaliana
AT1G20630 2.0kb downstream 2.0kb downstream 5342 true Chr1: 7146636-7151977 Arabidopsis thaliana
AT1G20630 2.0kb downstream 2.0kb downstream 2000 false Chr1: 7149978-7151977 Arabidopsis thaliana
AT1G20630 5.0kb upstream 5.0kb upstream 8342 true Chr1: 7141636-7149977 Arabidopsis thaliana
AT1G20630 5.0kb upstream 5.0kb upstream 5000 false Chr1: 7141636-7146635 Arabidopsis thaliana
AT1G20630 5.0kb downstream 5.0kb downstream 8342 true Chr1: 7146636-7154977 Arabidopsis thaliana
AT1G20630 5.0kb downstream 5.0kb downstream 5000 false Chr1: 7149978-7154977 Arabidopsis thaliana
AT1G20630 10.0kb upstream 10.0kb upstream 13342 true Chr1: 7136636-7149977 Arabidopsis thaliana
AT1G20630 10.0kb upstream 10.0kb upstream 10000 false Chr1: 7136636-7146635 Arabidopsis thaliana
AT1G20630 10.0kb downstream 10.0kb downstream 13342 true Chr1: 7146636-7159977 Arabidopsis thaliana
AT1G20630 10.0kb downstream 10.0kb downstream 10000 false Chr1: 7149978-7159977 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040958 5273 Angiosperm View MSA
122373420 5261 Brassicaceae View MSA
123837299 5264 Brassicales-Malvales View MSA
124338278 5266 SBM View MSA
124254242 5268 Malvidae View MSA
124061092 5270 Rosid View MSA
123744547 5271 Pentapetalae View MSA
122789351 5272 Eudicot View MSA
121344781 5274 Embryophyte View MSA
123424047 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.602        
cufflinks 7.164        
cufflinks 30.727     High  
cufflinks 12.239        
cufflinks 42.591     High High
cufflinks 5.245       Low

0 Strain