Gene : AT1G20480 A. thaliana TAIR10
Defline:  (1 of 5) PTHR24096//PTHR24096:SF186 - FAMILY NOT NAMED // 4-COUMARATE--COA LIGASE-LIKE 2-RELATED Genomic Order:  2059
Name:  ? AT1G20480 Secondary Identifier:  ? PAC:19655777
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G20480 0.5kb upstream 0.5kb upstream 2782 true Chr1: 7094833-7097614 Arabidopsis thaliana
AT1G20480 0.5kb upstream 0.5kb upstream 500 false Chr1: 7097115-7097614 Arabidopsis thaliana
AT1G20480 0.5kb downstream 0.5kb downstream 2782 true Chr1: 7094333-7097114 Arabidopsis thaliana
AT1G20480 0.5kb downstream 0.5kb downstream 500 false Chr1: 7094333-7094832 Arabidopsis thaliana
AT1G20480 1.0kb upstream 1.0kb upstream 3282 true Chr1: 7094833-7098114 Arabidopsis thaliana
AT1G20480 1.0kb upstream 1.0kb upstream 1000 false Chr1: 7097115-7098114 Arabidopsis thaliana
AT1G20480 1.0kb downstream 1.0kb downstream 3282 true Chr1: 7093833-7097114 Arabidopsis thaliana
AT1G20480 1.0kb downstream 1.0kb downstream 1000 false Chr1: 7093833-7094832 Arabidopsis thaliana
AT1G20480 2.0kb upstream 2.0kb upstream 4282 true Chr1: 7094833-7099114 Arabidopsis thaliana
AT1G20480 2.0kb upstream 2.0kb upstream 2000 false Chr1: 7097115-7099114 Arabidopsis thaliana
AT1G20480 2.0kb downstream 2.0kb downstream 4282 true Chr1: 7092833-7097114 Arabidopsis thaliana
AT1G20480 2.0kb downstream 2.0kb downstream 2000 false Chr1: 7092833-7094832 Arabidopsis thaliana
AT1G20480 5.0kb upstream 5.0kb upstream 7282 true Chr1: 7094833-7102114 Arabidopsis thaliana
AT1G20480 5.0kb upstream 5.0kb upstream 5000 false Chr1: 7097115-7102114 Arabidopsis thaliana
AT1G20480 5.0kb downstream 5.0kb downstream 7282 true Chr1: 7089833-7097114 Arabidopsis thaliana
AT1G20480 5.0kb downstream 5.0kb downstream 5000 false Chr1: 7089833-7094832 Arabidopsis thaliana
AT1G20480 10.0kb upstream 10.0kb upstream 12282 true Chr1: 7094833-7107114 Arabidopsis thaliana
AT1G20480 10.0kb upstream 10.0kb upstream 10000 false Chr1: 7097115-7107114 Arabidopsis thaliana
AT1G20480 10.0kb downstream 10.0kb downstream 12282 true Chr1: 7084833-7097114 Arabidopsis thaliana
AT1G20480 10.0kb downstream 10.0kb downstream 10000 false Chr1: 7084833-7094832 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360778 5261 Brassicaceae View MSA
123841176 5264 Brassicales-Malvales View MSA
124344613 5266 SBM View MSA
124237621 5268 Malvidae View MSA
124062315 5270 Rosid View MSA
123736531 5271 Pentapetalae View MSA
122785928 5272 Eudicot View MSA
122043430 5273 Angiosperm View MSA
121350022 5274 Embryophyte View MSA
123427881 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.518       Low
cufflinks 2.978        
cufflinks 1.151        
cufflinks 4.03       High
cufflinks 0.851        
cufflinks 3.128        

0 Strain