Gene : AT1G19480 A. thaliana TAIR10
Defline:  (1 of 3) K01247 - DNA-3-methyladenine glycosylase II (alkA) Genomic Order:  1962
Name:  ? AT1G19480 Secondary Identifier:  ? PAC:19657160
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G19480 0.5kb upstream 0.5kb upstream 2556 true Chr1: 6743853-6746408 Arabidopsis thaliana
AT1G19480 0.5kb upstream 0.5kb upstream 500 false Chr1: 6743853-6744352 Arabidopsis thaliana
AT1G19480 0.5kb downstream 0.5kb downstream 2556 true Chr1: 6744353-6746908 Arabidopsis thaliana
AT1G19480 0.5kb downstream 0.5kb downstream 500 false Chr1: 6746409-6746908 Arabidopsis thaliana
AT1G19480 1.0kb upstream 1.0kb upstream 3056 true Chr1: 6743353-6746408 Arabidopsis thaliana
AT1G19480 1.0kb upstream 1.0kb upstream 1000 false Chr1: 6743353-6744352 Arabidopsis thaliana
AT1G19480 1.0kb downstream 1.0kb downstream 3056 true Chr1: 6744353-6747408 Arabidopsis thaliana
AT1G19480 1.0kb downstream 1.0kb downstream 1000 false Chr1: 6746409-6747408 Arabidopsis thaliana
AT1G19480 2.0kb upstream 2.0kb upstream 4056 true Chr1: 6742353-6746408 Arabidopsis thaliana
AT1G19480 2.0kb upstream 2.0kb upstream 2000 false Chr1: 6742353-6744352 Arabidopsis thaliana
AT1G19480 2.0kb downstream 2.0kb downstream 4056 true Chr1: 6744353-6748408 Arabidopsis thaliana
AT1G19480 2.0kb downstream 2.0kb downstream 2000 false Chr1: 6746409-6748408 Arabidopsis thaliana
AT1G19480 5.0kb upstream 5.0kb upstream 7056 true Chr1: 6739353-6746408 Arabidopsis thaliana
AT1G19480 5.0kb upstream 5.0kb upstream 5000 false Chr1: 6739353-6744352 Arabidopsis thaliana
AT1G19480 5.0kb downstream 5.0kb downstream 7056 true Chr1: 6744353-6751408 Arabidopsis thaliana
AT1G19480 5.0kb downstream 5.0kb downstream 5000 false Chr1: 6746409-6751408 Arabidopsis thaliana
AT1G19480 10.0kb upstream 10.0kb upstream 12056 true Chr1: 6734353-6746408 Arabidopsis thaliana
AT1G19480 10.0kb upstream 10.0kb upstream 10000 false Chr1: 6734353-6744352 Arabidopsis thaliana
AT1G19480 10.0kb downstream 10.0kb downstream 12056 true Chr1: 6744353-6756408 Arabidopsis thaliana
AT1G19480 10.0kb downstream 10.0kb downstream 10000 false Chr1: 6746409-6756408 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027501 5273 Angiosperm View MSA
122374266 5261 Brassicaceae View MSA
123839711 5264 Brassicales-Malvales View MSA
124344726 5266 SBM View MSA
124243433 5268 Malvidae View MSA
124069073 5270 Rosid View MSA
123749896 5271 Pentapetalae View MSA
122796676 5272 Eudicot View MSA
121350563 5274 Embryophyte View MSA
123425595 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.479       Low
cufflinks 2.452       High
cufflinks 1.748        
cufflinks 2.459       High
cufflinks 1.738        
cufflinks 2.229        

0 Strain