Gene : AT1G18900 A. thaliana TAIR10
Defline:  (1 of 423) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1903
Name:  ? AT1G18900 Secondary Identifier:  ? PAC:19657763
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G18900 0.5kb upstream 0.5kb upstream 4131 true Chr1: 6528484-6532614 Arabidopsis thaliana
AT1G18900 0.5kb upstream 0.5kb upstream 500 false Chr1: 6528484-6528983 Arabidopsis thaliana
AT1G18900 0.5kb downstream 0.5kb downstream 4131 true Chr1: 6528984-6533114 Arabidopsis thaliana
AT1G18900 0.5kb downstream 0.5kb downstream 500 false Chr1: 6532615-6533114 Arabidopsis thaliana
AT1G18900 1.0kb upstream 1.0kb upstream 4631 true Chr1: 6527984-6532614 Arabidopsis thaliana
AT1G18900 1.0kb upstream 1.0kb upstream 1000 false Chr1: 6527984-6528983 Arabidopsis thaliana
AT1G18900 1.0kb downstream 1.0kb downstream 4631 true Chr1: 6528984-6533614 Arabidopsis thaliana
AT1G18900 1.0kb downstream 1.0kb downstream 1000 false Chr1: 6532615-6533614 Arabidopsis thaliana
AT1G18900 2.0kb upstream 2.0kb upstream 5631 true Chr1: 6526984-6532614 Arabidopsis thaliana
AT1G18900 2.0kb upstream 2.0kb upstream 2000 false Chr1: 6526984-6528983 Arabidopsis thaliana
AT1G18900 2.0kb downstream 2.0kb downstream 5631 true Chr1: 6528984-6534614 Arabidopsis thaliana
AT1G18900 2.0kb downstream 2.0kb downstream 2000 false Chr1: 6532615-6534614 Arabidopsis thaliana
AT1G18900 5.0kb upstream 5.0kb upstream 8631 true Chr1: 6523984-6532614 Arabidopsis thaliana
AT1G18900 5.0kb upstream 5.0kb upstream 5000 false Chr1: 6523984-6528983 Arabidopsis thaliana
AT1G18900 5.0kb downstream 5.0kb downstream 8631 true Chr1: 6528984-6537614 Arabidopsis thaliana
AT1G18900 5.0kb downstream 5.0kb downstream 5000 false Chr1: 6532615-6537614 Arabidopsis thaliana
AT1G18900 10.0kb upstream 10.0kb upstream 13631 true Chr1: 6518984-6532614 Arabidopsis thaliana
AT1G18900 10.0kb upstream 10.0kb upstream 10000 false Chr1: 6518984-6528983 Arabidopsis thaliana
AT1G18900 10.0kb downstream 10.0kb downstream 13631 true Chr1: 6528984-6542614 Arabidopsis thaliana
AT1G18900 10.0kb downstream 10.0kb downstream 10000 false Chr1: 6532615-6542614 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375002 5261 Brassicaceae View MSA
123800861 5264 Brassicales-Malvales View MSA
124350713 5266 SBM View MSA
124239510 5268 Malvidae View MSA
124066157 5270 Rosid View MSA
123739123 5271 Pentapetalae View MSA
122794218 5272 Eudicot View MSA
122042407 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121350963 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.454        
cufflinks 2.654        
cufflinks 1.838       Low
cufflinks 2.548        
cufflinks 2.12        
cufflinks 2.765        

0 Strain