Gene : AT1G18770 A. thaliana TAIR10
Defline:  (1 of 11) PTHR22937//PTHR22937:SF18 - RING FINGER CONTAINING PROTEIN // F6A14.12 PROTEIN-RELATED Genomic Order:  1888
Name:  ? AT1G18770 Secondary Identifier:  ? PAC:19656401
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G18770 0.5kb upstream 0.5kb upstream 1179 true Chr1: 6473370-6474548 Arabidopsis thaliana
AT1G18770 0.5kb upstream 0.5kb upstream 500 false Chr1: 6474049-6474548 Arabidopsis thaliana
AT1G18770 0.5kb downstream 0.5kb downstream 1179 true Chr1: 6472870-6474048 Arabidopsis thaliana
AT1G18770 0.5kb downstream 0.5kb downstream 500 false Chr1: 6472870-6473369 Arabidopsis thaliana
AT1G18770 1.0kb upstream 1.0kb upstream 1679 true Chr1: 6473370-6475048 Arabidopsis thaliana
AT1G18770 1.0kb upstream 1.0kb upstream 1000 false Chr1: 6474049-6475048 Arabidopsis thaliana
AT1G18770 1.0kb downstream 1.0kb downstream 1679 true Chr1: 6472370-6474048 Arabidopsis thaliana
AT1G18770 1.0kb downstream 1.0kb downstream 1000 false Chr1: 6472370-6473369 Arabidopsis thaliana
AT1G18770 2.0kb upstream 2.0kb upstream 2679 true Chr1: 6473370-6476048 Arabidopsis thaliana
AT1G18770 2.0kb upstream 2.0kb upstream 2000 false Chr1: 6474049-6476048 Arabidopsis thaliana
AT1G18770 2.0kb downstream 2.0kb downstream 2679 true Chr1: 6471370-6474048 Arabidopsis thaliana
AT1G18770 2.0kb downstream 2.0kb downstream 2000 false Chr1: 6471370-6473369 Arabidopsis thaliana
AT1G18770 5.0kb upstream 5.0kb upstream 5679 true Chr1: 6473370-6479048 Arabidopsis thaliana
AT1G18770 5.0kb upstream 5.0kb upstream 5000 false Chr1: 6474049-6479048 Arabidopsis thaliana
AT1G18770 5.0kb downstream 5.0kb downstream 5679 true Chr1: 6468370-6474048 Arabidopsis thaliana
AT1G18770 5.0kb downstream 5.0kb downstream 5000 false Chr1: 6468370-6473369 Arabidopsis thaliana
AT1G18770 10.0kb upstream 10.0kb upstream 10679 true Chr1: 6473370-6484048 Arabidopsis thaliana
AT1G18770 10.0kb upstream 10.0kb upstream 10000 false Chr1: 6474049-6484048 Arabidopsis thaliana
AT1G18770 10.0kb downstream 10.0kb downstream 10679 true Chr1: 6463370-6474048 Arabidopsis thaliana
AT1G18770 10.0kb downstream 10.0kb downstream 10000 false Chr1: 6463370-6473369 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122328927 5261 Brassicaceae Singleton cluster - no MSA
123770254 5264 Brassicales-Malvales Singleton cluster - no MSA
124268797 5266 SBM Singleton cluster - no MSA
124247947 5268 Malvidae View MSA
124074559 5270 Rosid View MSA
123753748 5271 Pentapetalae View MSA
122797850 5272 Eudicot View MSA
122051603 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351603 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain