Gene : AT1G18090 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11081//PTHR11081:SF27 - XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY // 5'-3' EXONUCLEASE FAMILY PROTEIN Genomic Order:  1822
Name:  ? AT1G18090 Secondary Identifier:  ? PAC:19651020
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G18090 0.5kb upstream 0.5kb upstream 3822 true Chr1: 6224001-6227822 Arabidopsis thaliana
AT1G18090 0.5kb upstream 0.5kb upstream 500 false Chr1: 6224001-6224500 Arabidopsis thaliana
AT1G18090 0.5kb downstream 0.5kb downstream 3822 true Chr1: 6224501-6228322 Arabidopsis thaliana
AT1G18090 0.5kb downstream 0.5kb downstream 500 false Chr1: 6227823-6228322 Arabidopsis thaliana
AT1G18090 1.0kb upstream 1.0kb upstream 4322 true Chr1: 6223501-6227822 Arabidopsis thaliana
AT1G18090 1.0kb upstream 1.0kb upstream 1000 false Chr1: 6223501-6224500 Arabidopsis thaliana
AT1G18090 1.0kb downstream 1.0kb downstream 4322 true Chr1: 6224501-6228822 Arabidopsis thaliana
AT1G18090 1.0kb downstream 1.0kb downstream 1000 false Chr1: 6227823-6228822 Arabidopsis thaliana
AT1G18090 2.0kb upstream 2.0kb upstream 5322 true Chr1: 6222501-6227822 Arabidopsis thaliana
AT1G18090 2.0kb upstream 2.0kb upstream 2000 false Chr1: 6222501-6224500 Arabidopsis thaliana
AT1G18090 2.0kb downstream 2.0kb downstream 5322 true Chr1: 6224501-6229822 Arabidopsis thaliana
AT1G18090 2.0kb downstream 2.0kb downstream 2000 false Chr1: 6227823-6229822 Arabidopsis thaliana
AT1G18090 5.0kb upstream 5.0kb upstream 8322 true Chr1: 6219501-6227822 Arabidopsis thaliana
AT1G18090 5.0kb upstream 5.0kb upstream 5000 false Chr1: 6219501-6224500 Arabidopsis thaliana
AT1G18090 5.0kb downstream 5.0kb downstream 8322 true Chr1: 6224501-6232822 Arabidopsis thaliana
AT1G18090 5.0kb downstream 5.0kb downstream 5000 false Chr1: 6227823-6232822 Arabidopsis thaliana
AT1G18090 10.0kb upstream 10.0kb upstream 13322 true Chr1: 6214501-6227822 Arabidopsis thaliana
AT1G18090 10.0kb upstream 10.0kb upstream 10000 false Chr1: 6214501-6224500 Arabidopsis thaliana
AT1G18090 10.0kb downstream 10.0kb downstream 13322 true Chr1: 6224501-6237822 Arabidopsis thaliana
AT1G18090 10.0kb downstream 10.0kb downstream 10000 false Chr1: 6227823-6237822 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026411 5273 Angiosperm View MSA
122360484 5261 Brassicaceae View MSA
123832006 5264 Brassicales-Malvales View MSA
124346210 5266 SBM View MSA
124242168 5268 Malvidae View MSA
124066271 5270 Rosid View MSA
123736682 5271 Pentapetalae View MSA
122787637 5272 Eudicot View MSA
121349640 5274 Embryophyte View MSA
123426218 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.176       High
cufflinks 0.653        
cufflinks 0.982        
cufflinks 0.63       Low
cufflinks 0.801        
cufflinks 0.803        

0 Strain