Gene : AT1G17860 A. thaliana TAIR10
Defline:  (1 of 7) PF00197 - Trypsin and protease inhibitor (Kunitz_legume) Genomic Order:  1800
Name:  ? AT1G17860 Secondary Identifier:  ? PAC:19657829
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G17860 0.5kb upstream 0.5kb upstream 1238 true Chr1: 6148801-6150038 Arabidopsis thaliana
AT1G17860 0.5kb upstream 0.5kb upstream 500 false Chr1: 6148801-6149300 Arabidopsis thaliana
AT1G17860 0.5kb downstream 0.5kb downstream 1238 true Chr1: 6149301-6150538 Arabidopsis thaliana
AT1G17860 0.5kb downstream 0.5kb downstream 500 false Chr1: 6150039-6150538 Arabidopsis thaliana
AT1G17860 1.0kb upstream 1.0kb upstream 1738 true Chr1: 6148301-6150038 Arabidopsis thaliana
AT1G17860 1.0kb upstream 1.0kb upstream 1000 false Chr1: 6148301-6149300 Arabidopsis thaliana
AT1G17860 1.0kb downstream 1.0kb downstream 1738 true Chr1: 6149301-6151038 Arabidopsis thaliana
AT1G17860 1.0kb downstream 1.0kb downstream 1000 false Chr1: 6150039-6151038 Arabidopsis thaliana
AT1G17860 2.0kb upstream 2.0kb upstream 2738 true Chr1: 6147301-6150038 Arabidopsis thaliana
AT1G17860 2.0kb upstream 2.0kb upstream 2000 false Chr1: 6147301-6149300 Arabidopsis thaliana
AT1G17860 2.0kb downstream 2.0kb downstream 2738 true Chr1: 6149301-6152038 Arabidopsis thaliana
AT1G17860 2.0kb downstream 2.0kb downstream 2000 false Chr1: 6150039-6152038 Arabidopsis thaliana
AT1G17860 5.0kb upstream 5.0kb upstream 5738 true Chr1: 6144301-6150038 Arabidopsis thaliana
AT1G17860 5.0kb upstream 5.0kb upstream 5000 false Chr1: 6144301-6149300 Arabidopsis thaliana
AT1G17860 5.0kb downstream 5.0kb downstream 5738 true Chr1: 6149301-6155038 Arabidopsis thaliana
AT1G17860 5.0kb downstream 5.0kb downstream 5000 false Chr1: 6150039-6155038 Arabidopsis thaliana
AT1G17860 10.0kb upstream 10.0kb upstream 10738 true Chr1: 6139301-6150038 Arabidopsis thaliana
AT1G17860 10.0kb upstream 10.0kb upstream 10000 false Chr1: 6139301-6149300 Arabidopsis thaliana
AT1G17860 10.0kb downstream 10.0kb downstream 10738 true Chr1: 6149301-6160038 Arabidopsis thaliana
AT1G17860 10.0kb downstream 10.0kb downstream 10000 false Chr1: 6150039-6160038 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372999 5261 Brassicaceae View MSA
123831499 5264 Brassicales-Malvales View MSA
124344591 5266 SBM View MSA
124249668 5268 Malvidae View MSA
124070415 5270 Rosid View MSA
123749279 5271 Pentapetalae View MSA
122795954 5272 Eudicot View MSA
122043570 5273 Angiosperm View MSA
121310150 5274 Embryophyte View MSA
123347719 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.453        
cufflinks 35.601     High High
cufflinks 9.812       Low
cufflinks 32.746     High  
cufflinks 11.631        
cufflinks 28.66        

0 Strain