Gene : AT1G28260 A. thaliana TAIR10
Defline:  (1 of 1) PTHR15696:SF3 - PROTEIN SMG7L Genomic Order:  2804
Name:  ? AT1G28260 Secondary Identifier:  ? PAC:19652411
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G28260 0.5kb upstream 0.5kb upstream 4168 true Chr1: 9875600-9879767 Arabidopsis thaliana
AT1G28260 0.5kb upstream 0.5kb upstream 500 false Chr1: 9879268-9879767 Arabidopsis thaliana
AT1G28260 0.5kb downstream 0.5kb downstream 4168 true Chr1: 9875100-9879267 Arabidopsis thaliana
AT1G28260 0.5kb downstream 0.5kb downstream 500 false Chr1: 9875100-9875599 Arabidopsis thaliana
AT1G28260 1.0kb upstream 1.0kb upstream 4668 true Chr1: 9875600-9880267 Arabidopsis thaliana
AT1G28260 1.0kb upstream 1.0kb upstream 1000 false Chr1: 9879268-9880267 Arabidopsis thaliana
AT1G28260 1.0kb downstream 1.0kb downstream 4668 true Chr1: 9874600-9879267 Arabidopsis thaliana
AT1G28260 1.0kb downstream 1.0kb downstream 1000 false Chr1: 9874600-9875599 Arabidopsis thaliana
AT1G28260 2.0kb upstream 2.0kb upstream 5668 true Chr1: 9875600-9881267 Arabidopsis thaliana
AT1G28260 2.0kb upstream 2.0kb upstream 2000 false Chr1: 9879268-9881267 Arabidopsis thaliana
AT1G28260 2.0kb downstream 2.0kb downstream 5668 true Chr1: 9873600-9879267 Arabidopsis thaliana
AT1G28260 2.0kb downstream 2.0kb downstream 2000 false Chr1: 9873600-9875599 Arabidopsis thaliana
AT1G28260 5.0kb upstream 5.0kb upstream 8668 true Chr1: 9875600-9884267 Arabidopsis thaliana
AT1G28260 5.0kb upstream 5.0kb upstream 5000 false Chr1: 9879268-9884267 Arabidopsis thaliana
AT1G28260 5.0kb downstream 5.0kb downstream 8668 true Chr1: 9870600-9879267 Arabidopsis thaliana
AT1G28260 5.0kb downstream 5.0kb downstream 5000 false Chr1: 9870600-9875599 Arabidopsis thaliana
AT1G28260 10.0kb upstream 10.0kb upstream 13668 true Chr1: 9875600-9889267 Arabidopsis thaliana
AT1G28260 10.0kb upstream 10.0kb upstream 10000 false Chr1: 9879268-9889267 Arabidopsis thaliana
AT1G28260 10.0kb downstream 10.0kb downstream 13668 true Chr1: 9865600-9879267 Arabidopsis thaliana
AT1G28260 10.0kb downstream 10.0kb downstream 10000 false Chr1: 9865600-9875599 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375000 5261 Brassicaceae View MSA
123833484 5264 Brassicales-Malvales View MSA
124350092 5266 SBM View MSA
124242900 5268 Malvidae View MSA
124050275 5270 Rosid View MSA
123740560 5271 Pentapetalae View MSA
122792675 5272 Eudicot View MSA
122043425 5273 Angiosperm View MSA
121310120 5274 Embryophyte View MSA
123426231 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.886        
cufflinks 3.796        
cufflinks 6.02        
cufflinks 9.257       High
cufflinks 8.05        
cufflinks 3.186       Low

0 Strain