Gene : AT1G28280 A. thaliana TAIR10
Defline:  (1 of 32) PF05678 - VQ motif (VQ) Genomic Order:  2806
Name:  ? AT1G28280 Secondary Identifier:  ? PAC:19649873
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G28280 0.5kb upstream 0.5kb upstream 1902 true Chr1: 9886077-9887978 Arabidopsis thaliana
AT1G28280 0.5kb upstream 0.5kb upstream 500 false Chr1: 9887479-9887978 Arabidopsis thaliana
AT1G28280 0.5kb downstream 0.5kb downstream 1902 true Chr1: 9885577-9887478 Arabidopsis thaliana
AT1G28280 0.5kb downstream 0.5kb downstream 500 false Chr1: 9885577-9886076 Arabidopsis thaliana
AT1G28280 1.0kb upstream 1.0kb upstream 2402 true Chr1: 9886077-9888478 Arabidopsis thaliana
AT1G28280 1.0kb upstream 1.0kb upstream 1000 false Chr1: 9887479-9888478 Arabidopsis thaliana
AT1G28280 1.0kb downstream 1.0kb downstream 2402 true Chr1: 9885077-9887478 Arabidopsis thaliana
AT1G28280 1.0kb downstream 1.0kb downstream 1000 false Chr1: 9885077-9886076 Arabidopsis thaliana
AT1G28280 2.0kb upstream 2.0kb upstream 3402 true Chr1: 9886077-9889478 Arabidopsis thaliana
AT1G28280 2.0kb upstream 2.0kb upstream 2000 false Chr1: 9887479-9889478 Arabidopsis thaliana
AT1G28280 2.0kb downstream 2.0kb downstream 3402 true Chr1: 9884077-9887478 Arabidopsis thaliana
AT1G28280 2.0kb downstream 2.0kb downstream 2000 false Chr1: 9884077-9886076 Arabidopsis thaliana
AT1G28280 5.0kb upstream 5.0kb upstream 6402 true Chr1: 9886077-9892478 Arabidopsis thaliana
AT1G28280 5.0kb upstream 5.0kb upstream 5000 false Chr1: 9887479-9892478 Arabidopsis thaliana
AT1G28280 5.0kb downstream 5.0kb downstream 6402 true Chr1: 9881077-9887478 Arabidopsis thaliana
AT1G28280 5.0kb downstream 5.0kb downstream 5000 false Chr1: 9881077-9886076 Arabidopsis thaliana
AT1G28280 10.0kb upstream 10.0kb upstream 11402 true Chr1: 9886077-9897478 Arabidopsis thaliana
AT1G28280 10.0kb upstream 10.0kb upstream 10000 false Chr1: 9887479-9897478 Arabidopsis thaliana
AT1G28280 10.0kb downstream 10.0kb downstream 11402 true Chr1: 9876077-9887478 Arabidopsis thaliana
AT1G28280 10.0kb downstream 10.0kb downstream 10000 false Chr1: 9876077-9886076 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373477 5261 Brassicaceae View MSA
123836266 5264 Brassicales-Malvales View MSA
124339984 5266 SBM View MSA
124250727 5268 Malvidae View MSA
124073802 5270 Rosid View MSA
123750842 5271 Pentapetalae View MSA
122795090 5272 Eudicot View MSA
122046673 5273 Angiosperm View MSA
121347985 5274 Embryophyte View MSA
123380701 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.708        
cufflinks 14.078        
cufflinks 11.665       Low
cufflinks 17.334       High
cufflinks 12.021        
cufflinks 15.499        

0 Strain