Gene : AT1G28070 A. thaliana TAIR10
Defline:  (1 of 2) PTHR14791//PTHR14791:SF27 - BOMB/KIRA PROTEINS Genomic Order:  2784
Name:  ? AT1G28070 Secondary Identifier:  ? PAC:19657928
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G28070 0.5kb upstream 0.5kb upstream 1503 true Chr1: 9782496-9783998 Arabidopsis thaliana
AT1G28070 0.5kb upstream 0.5kb upstream 500 false Chr1: 9782496-9782995 Arabidopsis thaliana
AT1G28070 0.5kb downstream 0.5kb downstream 1503 true Chr1: 9782996-9784498 Arabidopsis thaliana
AT1G28070 0.5kb downstream 0.5kb downstream 500 false Chr1: 9783999-9784498 Arabidopsis thaliana
AT1G28070 1.0kb upstream 1.0kb upstream 2003 true Chr1: 9781996-9783998 Arabidopsis thaliana
AT1G28070 1.0kb upstream 1.0kb upstream 1000 false Chr1: 9781996-9782995 Arabidopsis thaliana
AT1G28070 1.0kb downstream 1.0kb downstream 2003 true Chr1: 9782996-9784998 Arabidopsis thaliana
AT1G28070 1.0kb downstream 1.0kb downstream 1000 false Chr1: 9783999-9784998 Arabidopsis thaliana
AT1G28070 2.0kb upstream 2.0kb upstream 3003 true Chr1: 9780996-9783998 Arabidopsis thaliana
AT1G28070 2.0kb upstream 2.0kb upstream 2000 false Chr1: 9780996-9782995 Arabidopsis thaliana
AT1G28070 2.0kb downstream 2.0kb downstream 3003 true Chr1: 9782996-9785998 Arabidopsis thaliana
AT1G28070 2.0kb downstream 2.0kb downstream 2000 false Chr1: 9783999-9785998 Arabidopsis thaliana
AT1G28070 5.0kb upstream 5.0kb upstream 6003 true Chr1: 9777996-9783998 Arabidopsis thaliana
AT1G28070 5.0kb upstream 5.0kb upstream 5000 false Chr1: 9777996-9782995 Arabidopsis thaliana
AT1G28070 5.0kb downstream 5.0kb downstream 6003 true Chr1: 9782996-9788998 Arabidopsis thaliana
AT1G28070 5.0kb downstream 5.0kb downstream 5000 false Chr1: 9783999-9788998 Arabidopsis thaliana
AT1G28070 10.0kb upstream 10.0kb upstream 11003 true Chr1: 9772996-9783998 Arabidopsis thaliana
AT1G28070 10.0kb upstream 10.0kb upstream 10000 false Chr1: 9772996-9782995 Arabidopsis thaliana
AT1G28070 10.0kb downstream 10.0kb downstream 11003 true Chr1: 9782996-9793998 Arabidopsis thaliana
AT1G28070 10.0kb downstream 10.0kb downstream 10000 false Chr1: 9783999-9793998 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380109 5261 Brassicaceae View MSA
123802564 5264 Brassicales-Malvales View MSA
124299750 5266 SBM View MSA
124151079 5268 Malvidae View MSA
123876587 5270 Rosid View MSA
123460243 5271 Pentapetalae View MSA
122495620 5272 Eudicot View MSA
122050740 5273 Angiosperm View MSA
121350407 5274 Embryophyte View MSA
123381715 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.472       Low
cufflinks 12.19       High
cufflinks 8.338        
cufflinks 12.233       High
cufflinks 9.461        
cufflinks 9.793        

0 Strain