Gene : PUB45 A. thaliana TAIR10
Primary Identifier:  ? AT1G27910 Defline:  (1 of 3) PTHR22849:SF8 - U-BOX DOMAIN-CONTAINING PROTEIN 45-RELATED
Genomic Order:  2767 Name:  ? AT1G27910
Secondary Identifier:  ? PAC:19655534
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G27910 0.5kb upstream 0.5kb upstream 4479 true Chr1: 9720736-9725214 Arabidopsis thaliana
AT1G27910 0.5kb upstream 0.5kb upstream 500 false Chr1: 9724715-9725214 Arabidopsis thaliana
AT1G27910 0.5kb downstream 0.5kb downstream 4479 true Chr1: 9720236-9724714 Arabidopsis thaliana
AT1G27910 0.5kb downstream 0.5kb downstream 500 false Chr1: 9720236-9720735 Arabidopsis thaliana
AT1G27910 1.0kb upstream 1.0kb upstream 4979 true Chr1: 9720736-9725714 Arabidopsis thaliana
AT1G27910 1.0kb upstream 1.0kb upstream 1000 false Chr1: 9724715-9725714 Arabidopsis thaliana
AT1G27910 1.0kb downstream 1.0kb downstream 4979 true Chr1: 9719736-9724714 Arabidopsis thaliana
AT1G27910 1.0kb downstream 1.0kb downstream 1000 false Chr1: 9719736-9720735 Arabidopsis thaliana
AT1G27910 2.0kb upstream 2.0kb upstream 5979 true Chr1: 9720736-9726714 Arabidopsis thaliana
AT1G27910 2.0kb upstream 2.0kb upstream 2000 false Chr1: 9724715-9726714 Arabidopsis thaliana
AT1G27910 2.0kb downstream 2.0kb downstream 5979 true Chr1: 9718736-9724714 Arabidopsis thaliana
AT1G27910 2.0kb downstream 2.0kb downstream 2000 false Chr1: 9718736-9720735 Arabidopsis thaliana
AT1G27910 5.0kb upstream 5.0kb upstream 8979 true Chr1: 9720736-9729714 Arabidopsis thaliana
AT1G27910 5.0kb upstream 5.0kb upstream 5000 false Chr1: 9724715-9729714 Arabidopsis thaliana
AT1G27910 5.0kb downstream 5.0kb downstream 8979 true Chr1: 9715736-9724714 Arabidopsis thaliana
AT1G27910 5.0kb downstream 5.0kb downstream 5000 false Chr1: 9715736-9720735 Arabidopsis thaliana
AT1G27910 10.0kb upstream 10.0kb upstream 13979 true Chr1: 9720736-9734714 Arabidopsis thaliana
AT1G27910 10.0kb upstream 10.0kb upstream 10000 false Chr1: 9724715-9734714 Arabidopsis thaliana
AT1G27910 10.0kb downstream 10.0kb downstream 13979 true Chr1: 9710736-9724714 Arabidopsis thaliana
AT1G27910 10.0kb downstream 10.0kb downstream 10000 false Chr1: 9710736-9720735 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373236 5261 Brassicaceae View MSA
123836978 5264 Brassicales-Malvales View MSA
124341727 5266 SBM View MSA
124239418 5268 Malvidae View MSA
124065910 5270 Rosid View MSA
123743713 5271 Pentapetalae View MSA
122796921 5272 Eudicot View MSA
122048855 5273 Angiosperm View MSA
121345281 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.924        
cufflinks 12.209        
cufflinks 4.646       Low
cufflinks 11.485        
cufflinks 5.513        
cufflinks 15.663       High

0 Strain