Gene : AT1G27700 A. thaliana TAIR10
Defline:  (1 of 1) PTHR19957//PTHR19957:SF118 - SYNTAXIN // SUBFAMILY NOT NAMED Genomic Order:  2750
Name:  ? AT1G27700 Secondary Identifier:  ? PAC:19650554
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G27700 0.5kb upstream 0.5kb upstream 2204 true Chr1: 9640198-9642401 Arabidopsis thaliana
AT1G27700 0.5kb upstream 0.5kb upstream 500 false Chr1: 9641902-9642401 Arabidopsis thaliana
AT1G27700 0.5kb downstream 0.5kb downstream 2204 true Chr1: 9639698-9641901 Arabidopsis thaliana
AT1G27700 0.5kb downstream 0.5kb downstream 500 false Chr1: 9639698-9640197 Arabidopsis thaliana
AT1G27700 1.0kb upstream 1.0kb upstream 2704 true Chr1: 9640198-9642901 Arabidopsis thaliana
AT1G27700 1.0kb upstream 1.0kb upstream 1000 false Chr1: 9641902-9642901 Arabidopsis thaliana
AT1G27700 1.0kb downstream 1.0kb downstream 2704 true Chr1: 9639198-9641901 Arabidopsis thaliana
AT1G27700 1.0kb downstream 1.0kb downstream 1000 false Chr1: 9639198-9640197 Arabidopsis thaliana
AT1G27700 2.0kb upstream 2.0kb upstream 3704 true Chr1: 9640198-9643901 Arabidopsis thaliana
AT1G27700 2.0kb upstream 2.0kb upstream 2000 false Chr1: 9641902-9643901 Arabidopsis thaliana
AT1G27700 2.0kb downstream 2.0kb downstream 3704 true Chr1: 9638198-9641901 Arabidopsis thaliana
AT1G27700 2.0kb downstream 2.0kb downstream 2000 false Chr1: 9638198-9640197 Arabidopsis thaliana
AT1G27700 5.0kb upstream 5.0kb upstream 6704 true Chr1: 9640198-9646901 Arabidopsis thaliana
AT1G27700 5.0kb upstream 5.0kb upstream 5000 false Chr1: 9641902-9646901 Arabidopsis thaliana
AT1G27700 5.0kb downstream 5.0kb downstream 6704 true Chr1: 9635198-9641901 Arabidopsis thaliana
AT1G27700 5.0kb downstream 5.0kb downstream 5000 false Chr1: 9635198-9640197 Arabidopsis thaliana
AT1G27700 10.0kb upstream 10.0kb upstream 11704 true Chr1: 9640198-9651901 Arabidopsis thaliana
AT1G27700 10.0kb upstream 10.0kb upstream 10000 false Chr1: 9641902-9651901 Arabidopsis thaliana
AT1G27700 10.0kb downstream 10.0kb downstream 11704 true Chr1: 9630198-9641901 Arabidopsis thaliana
AT1G27700 10.0kb downstream 10.0kb downstream 10000 false Chr1: 9630198-9640197 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364948 5261 Brassicaceae View MSA
123837156 5264 Brassicales-Malvales View MSA
124350252 5266 SBM View MSA
124240766 5268 Malvidae View MSA
124064346 5270 Rosid View MSA
123743910 5271 Pentapetalae View MSA
122788324 5272 Eudicot View MSA
122042907 5273 Angiosperm View MSA
121348883 5274 Embryophyte View MSA
123381058 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.922        
cufflinks 8.429        
cufflinks 7.167        
cufflinks 7.814        
cufflinks 4.966       Low
cufflinks 9.539       High

0 Strain