Gene : AT1G27190 A. thaliana TAIR10
Defline:  (1 of 9) PF00560//PF07714//PF08263 - Leucine Rich Repeat (LRR_1) // Protein tyrosine kinase (Pkinase_Tyr) // Leucine rich repeat N-terminal domain (LRRNT_2) Genomic Order:  2694
Name:  ? AT1G27190 Secondary Identifier:  ? PAC:19651729
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G27190 0.5kb upstream 0.5kb upstream 2669 true Chr1: 9446657-9449325 Arabidopsis thaliana
AT1G27190 0.5kb upstream 0.5kb upstream 500 false Chr1: 9448826-9449325 Arabidopsis thaliana
AT1G27190 0.5kb downstream 0.5kb downstream 2669 true Chr1: 9446157-9448825 Arabidopsis thaliana
AT1G27190 0.5kb downstream 0.5kb downstream 500 false Chr1: 9446157-9446656 Arabidopsis thaliana
AT1G27190 1.0kb upstream 1.0kb upstream 3169 true Chr1: 9446657-9449825 Arabidopsis thaliana
AT1G27190 1.0kb upstream 1.0kb upstream 1000 false Chr1: 9448826-9449825 Arabidopsis thaliana
AT1G27190 1.0kb downstream 1.0kb downstream 3169 true Chr1: 9445657-9448825 Arabidopsis thaliana
AT1G27190 1.0kb downstream 1.0kb downstream 1000 false Chr1: 9445657-9446656 Arabidopsis thaliana
AT1G27190 2.0kb upstream 2.0kb upstream 4169 true Chr1: 9446657-9450825 Arabidopsis thaliana
AT1G27190 2.0kb upstream 2.0kb upstream 2000 false Chr1: 9448826-9450825 Arabidopsis thaliana
AT1G27190 2.0kb downstream 2.0kb downstream 4169 true Chr1: 9444657-9448825 Arabidopsis thaliana
AT1G27190 2.0kb downstream 2.0kb downstream 2000 false Chr1: 9444657-9446656 Arabidopsis thaliana
AT1G27190 5.0kb upstream 5.0kb upstream 7169 true Chr1: 9446657-9453825 Arabidopsis thaliana
AT1G27190 5.0kb upstream 5.0kb upstream 5000 false Chr1: 9448826-9453825 Arabidopsis thaliana
AT1G27190 5.0kb downstream 5.0kb downstream 7169 true Chr1: 9441657-9448825 Arabidopsis thaliana
AT1G27190 5.0kb downstream 5.0kb downstream 5000 false Chr1: 9441657-9446656 Arabidopsis thaliana
AT1G27190 10.0kb upstream 10.0kb upstream 12169 true Chr1: 9446657-9458825 Arabidopsis thaliana
AT1G27190 10.0kb upstream 10.0kb upstream 10000 false Chr1: 9448826-9458825 Arabidopsis thaliana
AT1G27190 10.0kb downstream 10.0kb downstream 12169 true Chr1: 9436657-9448825 Arabidopsis thaliana
AT1G27190 10.0kb downstream 10.0kb downstream 10000 false Chr1: 9436657-9446656 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362731 5261 Brassicaceae View MSA
123834545 5264 Brassicales-Malvales View MSA
124343267 5266 SBM View MSA
124238301 5268 Malvidae View MSA
124071838 5270 Rosid View MSA
123750976 5271 Pentapetalae View MSA
122795298 5272 Eudicot View MSA
122046399 5273 Angiosperm View MSA
121346190 5274 Embryophyte View MSA
123380345 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.469     High  
cufflinks 33.727     High  
cufflinks 24.678       Low
cufflinks 36.318     High  
cufflinks 23.286       Low
cufflinks 40.75     High High

0 Strain