Gene : AT1G27350 A. thaliana TAIR10

Defline:  (1 of 2) PTHR15601//PTHR15601:SF4 - STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN SERP1/RAMP4 // SUBFAMILY NOT NAMED Genomic Order:  2710
Name:  ? AT1G27350 Secondary Identifier:  ? PAC:19654006

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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

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Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G27350 0.5kb upstream 0.5kb upstream 1775 true Chr1: 9498151-9499925 Arabidopsis thaliana
AT1G27350 0.5kb upstream 0.5kb upstream 500 false Chr1: 9499426-9499925 Arabidopsis thaliana
AT1G27350 0.5kb downstream 0.5kb downstream 1775 true Chr1: 9497651-9499425 Arabidopsis thaliana
AT1G27350 0.5kb downstream 0.5kb downstream 500 false Chr1: 9497651-9498150 Arabidopsis thaliana
AT1G27350 1.0kb upstream 1.0kb upstream 2275 true Chr1: 9498151-9500425 Arabidopsis thaliana
AT1G27350 1.0kb upstream 1.0kb upstream 1000 false Chr1: 9499426-9500425 Arabidopsis thaliana
AT1G27350 1.0kb downstream 1.0kb downstream 2275 true Chr1: 9497151-9499425 Arabidopsis thaliana
AT1G27350 1.0kb downstream 1.0kb downstream 1000 false Chr1: 9497151-9498150 Arabidopsis thaliana
AT1G27350 2.0kb upstream 2.0kb upstream 3275 true Chr1: 9498151-9501425 Arabidopsis thaliana
AT1G27350 2.0kb upstream 2.0kb upstream 2000 false Chr1: 9499426-9501425 Arabidopsis thaliana
AT1G27350 2.0kb downstream 2.0kb downstream 3275 true Chr1: 9496151-9499425 Arabidopsis thaliana
AT1G27350 2.0kb downstream 2.0kb downstream 2000 false Chr1: 9496151-9498150 Arabidopsis thaliana
AT1G27350 5.0kb upstream 5.0kb upstream 6275 true Chr1: 9498151-9504425 Arabidopsis thaliana
AT1G27350 5.0kb upstream 5.0kb upstream 5000 false Chr1: 9499426-9504425 Arabidopsis thaliana
AT1G27350 5.0kb downstream 5.0kb downstream 6275 true Chr1: 9493151-9499425 Arabidopsis thaliana
AT1G27350 5.0kb downstream 5.0kb downstream 5000 false Chr1: 9493151-9498150 Arabidopsis thaliana
AT1G27350 10.0kb upstream 10.0kb upstream 11275 true Chr1: 9498151-9509425 Arabidopsis thaliana
AT1G27350 10.0kb upstream 10.0kb upstream 10000 false Chr1: 9499426-9509425 Arabidopsis thaliana
AT1G27350 10.0kb downstream 10.0kb downstream 11275 true Chr1: 9488151-9499425 Arabidopsis thaliana
AT1G27350 10.0kb downstream 10.0kb downstream 10000 false Chr1: 9488151-9498150 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381593 5261 Brassicaceae View MSA
123829697 5264 Brassicales-Malvales View MSA
124340832 5266 SBM View MSA
124244099 5268 Malvidae View MSA
124071023 5270 Rosid View MSA
123745695 5271 Pentapetalae View MSA
122795442 5272 Eudicot View MSA
122050162 5273 Angiosperm View MSA
121345372 5274 Embryophyte View MSA
123428764 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 43.844     High  
cufflinks 41.44     High  
cufflinks 25.185       Low
cufflinks 40.296     High  
cufflinks 27.624     High Low
cufflinks 46.417     High  

0 Strain