Gene : AT1G27100 A. thaliana TAIR10
Defline:  (1 of 4) PTHR31205:SF2 - ACTIN CROSS-LINKING PROTEIN Genomic Order:  2684
Name:  ? AT1G27100 Secondary Identifier:  ? PAC:19650468
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G27100 0.5kb upstream 0.5kb upstream 4548 true Chr1: 9407125-9411672 Arabidopsis thaliana
AT1G27100 0.5kb upstream 0.5kb upstream 500 false Chr1: 9411173-9411672 Arabidopsis thaliana
AT1G27100 0.5kb downstream 0.5kb downstream 4548 true Chr1: 9406625-9411172 Arabidopsis thaliana
AT1G27100 0.5kb downstream 0.5kb downstream 500 false Chr1: 9406625-9407124 Arabidopsis thaliana
AT1G27100 1.0kb upstream 1.0kb upstream 5048 true Chr1: 9407125-9412172 Arabidopsis thaliana
AT1G27100 1.0kb upstream 1.0kb upstream 1000 false Chr1: 9411173-9412172 Arabidopsis thaliana
AT1G27100 1.0kb downstream 1.0kb downstream 5048 true Chr1: 9406125-9411172 Arabidopsis thaliana
AT1G27100 1.0kb downstream 1.0kb downstream 1000 false Chr1: 9406125-9407124 Arabidopsis thaliana
AT1G27100 2.0kb upstream 2.0kb upstream 6048 true Chr1: 9407125-9413172 Arabidopsis thaliana
AT1G27100 2.0kb upstream 2.0kb upstream 2000 false Chr1: 9411173-9413172 Arabidopsis thaliana
AT1G27100 2.0kb downstream 2.0kb downstream 6048 true Chr1: 9405125-9411172 Arabidopsis thaliana
AT1G27100 2.0kb downstream 2.0kb downstream 2000 false Chr1: 9405125-9407124 Arabidopsis thaliana
AT1G27100 5.0kb upstream 5.0kb upstream 9048 true Chr1: 9407125-9416172 Arabidopsis thaliana
AT1G27100 5.0kb upstream 5.0kb upstream 5000 false Chr1: 9411173-9416172 Arabidopsis thaliana
AT1G27100 5.0kb downstream 5.0kb downstream 9048 true Chr1: 9402125-9411172 Arabidopsis thaliana
AT1G27100 5.0kb downstream 5.0kb downstream 5000 false Chr1: 9402125-9407124 Arabidopsis thaliana
AT1G27100 10.0kb upstream 10.0kb upstream 14048 true Chr1: 9407125-9421172 Arabidopsis thaliana
AT1G27100 10.0kb upstream 10.0kb upstream 10000 false Chr1: 9411173-9421172 Arabidopsis thaliana
AT1G27100 10.0kb downstream 10.0kb downstream 14048 true Chr1: 9397125-9411172 Arabidopsis thaliana
AT1G27100 10.0kb downstream 10.0kb downstream 10000 false Chr1: 9397125-9407124 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363805 5261 Brassicaceae View MSA
123831929 5264 Brassicales-Malvales View MSA
124337924 5266 SBM View MSA
124249792 5268 Malvidae View MSA
124067257 5270 Rosid View MSA
123752337 5271 Pentapetalae View MSA
122792795 5272 Eudicot View MSA
122046577 5273 Angiosperm View MSA
121350939 5274 Embryophyte View MSA
123381941 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.798     High Low
cufflinks 88.542     High High
cufflinks 37.189     High  
cufflinks 74.485     High  
cufflinks 31.697     High Low
cufflinks 84.745     High  

0 Strain