Gene : AT1G27000 A. thaliana TAIR10
Defline:  (1 of 6) PF07889 - Protein of unknown function (DUF1664) (DUF1664) Genomic Order:  2673
Name:  ? AT1G27000 Secondary Identifier:  ? PAC:19653933
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G27000 0.5kb upstream 0.5kb upstream 3295 true Chr1: 9373426-9376720 Arabidopsis thaliana
AT1G27000 0.5kb upstream 0.5kb upstream 500 false Chr1: 9373426-9373925 Arabidopsis thaliana
AT1G27000 0.5kb downstream 0.5kb downstream 3295 true Chr1: 9373926-9377220 Arabidopsis thaliana
AT1G27000 0.5kb downstream 0.5kb downstream 500 false Chr1: 9376721-9377220 Arabidopsis thaliana
AT1G27000 1.0kb upstream 1.0kb upstream 3795 true Chr1: 9372926-9376720 Arabidopsis thaliana
AT1G27000 1.0kb upstream 1.0kb upstream 1000 false Chr1: 9372926-9373925 Arabidopsis thaliana
AT1G27000 1.0kb downstream 1.0kb downstream 3795 true Chr1: 9373926-9377720 Arabidopsis thaliana
AT1G27000 1.0kb downstream 1.0kb downstream 1000 false Chr1: 9376721-9377720 Arabidopsis thaliana
AT1G27000 2.0kb upstream 2.0kb upstream 4795 true Chr1: 9371926-9376720 Arabidopsis thaliana
AT1G27000 2.0kb upstream 2.0kb upstream 2000 false Chr1: 9371926-9373925 Arabidopsis thaliana
AT1G27000 2.0kb downstream 2.0kb downstream 4795 true Chr1: 9373926-9378720 Arabidopsis thaliana
AT1G27000 2.0kb downstream 2.0kb downstream 2000 false Chr1: 9376721-9378720 Arabidopsis thaliana
AT1G27000 5.0kb upstream 5.0kb upstream 7795 true Chr1: 9368926-9376720 Arabidopsis thaliana
AT1G27000 5.0kb upstream 5.0kb upstream 5000 false Chr1: 9368926-9373925 Arabidopsis thaliana
AT1G27000 5.0kb downstream 5.0kb downstream 7795 true Chr1: 9373926-9381720 Arabidopsis thaliana
AT1G27000 5.0kb downstream 5.0kb downstream 5000 false Chr1: 9376721-9381720 Arabidopsis thaliana
AT1G27000 10.0kb upstream 10.0kb upstream 12795 true Chr1: 9363926-9376720 Arabidopsis thaliana
AT1G27000 10.0kb upstream 10.0kb upstream 10000 false Chr1: 9363926-9373925 Arabidopsis thaliana
AT1G27000 10.0kb downstream 10.0kb downstream 12795 true Chr1: 9373926-9386720 Arabidopsis thaliana
AT1G27000 10.0kb downstream 10.0kb downstream 10000 false Chr1: 9376721-9386720 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365701 5261 Brassicaceae View MSA
123838361 5264 Brassicales-Malvales View MSA
124339218 5266 SBM View MSA
124245253 5268 Malvidae View MSA
124066515 5270 Rosid View MSA
123745740 5271 Pentapetalae View MSA
122789386 5272 Eudicot View MSA
122050291 5273 Angiosperm View MSA
121350785 5274 Embryophyte View MSA
123428058 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.622       Low
cufflinks 25.412        
cufflinks 24.713        
cufflinks 26.817        
cufflinks 29.538     High High
cufflinks 24.052        

0 Strain