Gene : AT1G25440 A. thaliana TAIR10
Defline:  (1 of 4) PTHR31874:SF1 - CCT MOTIF FAMILY PROTEIN-RELATED Genomic Order:  2554
Name:  ? AT1G25440 Secondary Identifier:  ? PAC:19654314
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G25440 0.5kb upstream 0.5kb upstream 2245 true Chr1: 8933716-8935960 Arabidopsis thaliana
AT1G25440 0.5kb upstream 0.5kb upstream 500 false Chr1: 8935461-8935960 Arabidopsis thaliana
AT1G25440 0.5kb downstream 0.5kb downstream 2245 true Chr1: 8933216-8935460 Arabidopsis thaliana
AT1G25440 0.5kb downstream 0.5kb downstream 500 false Chr1: 8933216-8933715 Arabidopsis thaliana
AT1G25440 1.0kb upstream 1.0kb upstream 2745 true Chr1: 8933716-8936460 Arabidopsis thaliana
AT1G25440 1.0kb upstream 1.0kb upstream 1000 false Chr1: 8935461-8936460 Arabidopsis thaliana
AT1G25440 1.0kb downstream 1.0kb downstream 2745 true Chr1: 8932716-8935460 Arabidopsis thaliana
AT1G25440 1.0kb downstream 1.0kb downstream 1000 false Chr1: 8932716-8933715 Arabidopsis thaliana
AT1G25440 2.0kb upstream 2.0kb upstream 3745 true Chr1: 8933716-8937460 Arabidopsis thaliana
AT1G25440 2.0kb upstream 2.0kb upstream 2000 false Chr1: 8935461-8937460 Arabidopsis thaliana
AT1G25440 2.0kb downstream 2.0kb downstream 3745 true Chr1: 8931716-8935460 Arabidopsis thaliana
AT1G25440 2.0kb downstream 2.0kb downstream 2000 false Chr1: 8931716-8933715 Arabidopsis thaliana
AT1G25440 5.0kb upstream 5.0kb upstream 6745 true Chr1: 8933716-8940460 Arabidopsis thaliana
AT1G25440 5.0kb upstream 5.0kb upstream 5000 false Chr1: 8935461-8940460 Arabidopsis thaliana
AT1G25440 5.0kb downstream 5.0kb downstream 6745 true Chr1: 8928716-8935460 Arabidopsis thaliana
AT1G25440 5.0kb downstream 5.0kb downstream 5000 false Chr1: 8928716-8933715 Arabidopsis thaliana
AT1G25440 10.0kb upstream 10.0kb upstream 11745 true Chr1: 8933716-8945460 Arabidopsis thaliana
AT1G25440 10.0kb upstream 10.0kb upstream 10000 false Chr1: 8935461-8945460 Arabidopsis thaliana
AT1G25440 10.0kb downstream 10.0kb downstream 11745 true Chr1: 8923716-8935460 Arabidopsis thaliana
AT1G25440 10.0kb downstream 10.0kb downstream 10000 false Chr1: 8923716-8933715 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360806 5261 Brassicaceae View MSA
123839349 5264 Brassicales-Malvales View MSA
124350097 5266 SBM View MSA
124251875 5268 Malvidae View MSA
124061495 5270 Rosid View MSA
123743712 5271 Pentapetalae View MSA
122787534 5272 Eudicot View MSA
122046214 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121351074 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 212.814     High High
cufflinks 0.478        
cufflinks 125.194     High  
cufflinks 0.714        
cufflinks 127.976     High  
cufflinks 0.287     Low Low

0 Strain