Gene : KCS5 A. thaliana TAIR10
Primary Identifier:  ? AT1G25450 Defline:  (1 of 2) PTHR31561:SF5 - 3-KETOACYL-COA SYNTHASE 5-RELATED
Genomic Order:  2555 Name:  ? AT1G25450
Secondary Identifier:  ? PAC:19654794
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Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5080 Arabidopsis thaliana pathologic  
Athaliana PWY-6433 Arabidopsis thaliana pathologic  
Athaliana PWY-6598 Arabidopsis thaliana pathologic  
Athaliana PWY-7036 Arabidopsis thaliana pathologic  
Athaliana PWY-7601 Arabidopsis thaliana pathologic  
Athaliana PWY-7619 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G25450 0.5kb upstream 0.5kb upstream 2409 true Chr1: 8938479-8940887 Arabidopsis thaliana
AT1G25450 0.5kb upstream 0.5kb upstream 500 false Chr1: 8940388-8940887 Arabidopsis thaliana
AT1G25450 0.5kb downstream 0.5kb downstream 2409 true Chr1: 8937979-8940387 Arabidopsis thaliana
AT1G25450 0.5kb downstream 0.5kb downstream 500 false Chr1: 8937979-8938478 Arabidopsis thaliana
AT1G25450 1.0kb upstream 1.0kb upstream 2909 true Chr1: 8938479-8941387 Arabidopsis thaliana
AT1G25450 1.0kb upstream 1.0kb upstream 1000 false Chr1: 8940388-8941387 Arabidopsis thaliana
AT1G25450 1.0kb downstream 1.0kb downstream 2909 true Chr1: 8937479-8940387 Arabidopsis thaliana
AT1G25450 1.0kb downstream 1.0kb downstream 1000 false Chr1: 8937479-8938478 Arabidopsis thaliana
AT1G25450 2.0kb upstream 2.0kb upstream 3909 true Chr1: 8938479-8942387 Arabidopsis thaliana
AT1G25450 2.0kb upstream 2.0kb upstream 2000 false Chr1: 8940388-8942387 Arabidopsis thaliana
AT1G25450 2.0kb downstream 2.0kb downstream 3909 true Chr1: 8936479-8940387 Arabidopsis thaliana
AT1G25450 2.0kb downstream 2.0kb downstream 2000 false Chr1: 8936479-8938478 Arabidopsis thaliana
AT1G25450 5.0kb upstream 5.0kb upstream 6909 true Chr1: 8938479-8945387 Arabidopsis thaliana
AT1G25450 5.0kb upstream 5.0kb upstream 5000 false Chr1: 8940388-8945387 Arabidopsis thaliana
AT1G25450 5.0kb downstream 5.0kb downstream 6909 true Chr1: 8933479-8940387 Arabidopsis thaliana
AT1G25450 5.0kb downstream 5.0kb downstream 5000 false Chr1: 8933479-8938478 Arabidopsis thaliana
AT1G25450 10.0kb upstream 10.0kb upstream 11909 true Chr1: 8938479-8950387 Arabidopsis thaliana
AT1G25450 10.0kb upstream 10.0kb upstream 10000 false Chr1: 8940388-8950387 Arabidopsis thaliana
AT1G25450 10.0kb downstream 10.0kb downstream 11909 true Chr1: 8928479-8940387 Arabidopsis thaliana
AT1G25450 10.0kb downstream 10.0kb downstream 10000 false Chr1: 8928479-8938478 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380577 5261 Brassicaceae View MSA
123802796 5264 Brassicales-Malvales View MSA
124299962 5266 SBM View MSA
124247934 5268 Malvidae View MSA
124074382 5270 Rosid View MSA
123744253 5271 Pentapetalae View MSA
122788881 5272 Eudicot View MSA
122042493 5273 Angiosperm View MSA
121309978 5274 Embryophyte View MSA
123347592 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.95       High
cufflinks 2.295       Low
cufflinks 6.041        
cufflinks 3.679        
cufflinks 7.964        
cufflinks 4.711        

0 Strain