Gene : SNL3 A. thaliana TAIR10
Primary Identifier:  ? AT1G24190 Defline:  (1 of 6) K11644 - paired amphipathic helix protein Sin3a (SIN3A)
Genomic Order:  2454 Name:  ? AT1G24190
Secondary Identifier:  ? PAC:19653957
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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G24190 0.5kb upstream 0.5kb upstream 7448 true Chr1: 8563558-8571005 Arabidopsis thaliana
AT1G24190 0.5kb upstream 0.5kb upstream 500 false Chr1: 8570506-8571005 Arabidopsis thaliana
AT1G24190 0.5kb downstream 0.5kb downstream 7448 true Chr1: 8563058-8570505 Arabidopsis thaliana
AT1G24190 0.5kb downstream 0.5kb downstream 500 false Chr1: 8563058-8563557 Arabidopsis thaliana
AT1G24190 1.0kb upstream 1.0kb upstream 7948 true Chr1: 8563558-8571505 Arabidopsis thaliana
AT1G24190 1.0kb upstream 1.0kb upstream 1000 false Chr1: 8570506-8571505 Arabidopsis thaliana
AT1G24190 1.0kb downstream 1.0kb downstream 7948 true Chr1: 8562558-8570505 Arabidopsis thaliana
AT1G24190 1.0kb downstream 1.0kb downstream 1000 false Chr1: 8562558-8563557 Arabidopsis thaliana
AT1G24190 2.0kb upstream 2.0kb upstream 8948 true Chr1: 8563558-8572505 Arabidopsis thaliana
AT1G24190 2.0kb upstream 2.0kb upstream 2000 false Chr1: 8570506-8572505 Arabidopsis thaliana
AT1G24190 2.0kb downstream 2.0kb downstream 8948 true Chr1: 8561558-8570505 Arabidopsis thaliana
AT1G24190 2.0kb downstream 2.0kb downstream 2000 false Chr1: 8561558-8563557 Arabidopsis thaliana
AT1G24190 5.0kb upstream 5.0kb upstream 11948 true Chr1: 8563558-8575505 Arabidopsis thaliana
AT1G24190 5.0kb upstream 5.0kb upstream 5000 false Chr1: 8570506-8575505 Arabidopsis thaliana
AT1G24190 5.0kb downstream 5.0kb downstream 11948 true Chr1: 8558558-8570505 Arabidopsis thaliana
AT1G24190 5.0kb downstream 5.0kb downstream 5000 false Chr1: 8558558-8563557 Arabidopsis thaliana
AT1G24190 10.0kb upstream 10.0kb upstream 16948 true Chr1: 8563558-8580505 Arabidopsis thaliana
AT1G24190 10.0kb upstream 10.0kb upstream 10000 false Chr1: 8570506-8580505 Arabidopsis thaliana
AT1G24190 10.0kb downstream 10.0kb downstream 16948 true Chr1: 8553558-8570505 Arabidopsis thaliana
AT1G24190 10.0kb downstream 10.0kb downstream 10000 false Chr1: 8553558-8563557 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122338264 5261 Brassicaceae View MSA
123838025 5264 Brassicales-Malvales View MSA
124338012 5266 SBM View MSA
124241191 5268 Malvidae View MSA
124067617 5270 Rosid View MSA
123752813 5271 Pentapetalae View MSA
122791038 5272 Eudicot View MSA
122047034 5273 Angiosperm View MSA
121346152 5274 Embryophyte View MSA
123428507 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.371        
cufflinks 5.301        
cufflinks 3.835       Low
cufflinks 5.821        
cufflinks 4.452        
cufflinks 5.435        

0 Strain