Gene : LACS2 A. thaliana TAIR10
Primary Identifier:  ? AT1G49430 Defline:  (1 of 1) PTHR24096:SF134 - LONG CHAIN ACYL-COA SYNTHETASE 2
Genomic Order:  3970 Name:  ? AT1G49430
Secondary Identifier:  ? PAC:19649741
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

13 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1121 Arabidopsis thaliana pathologic  
Athaliana PWY-321 Arabidopsis thaliana pathologic  
Athaliana PWY-5136 Arabidopsis thaliana pathologic  
Athaliana PWY-5143 Arabidopsis thaliana pathologic  
Athaliana PWY-5147 Arabidopsis thaliana pathologic  
Athaliana PWY-5156 Arabidopsis thaliana pathologic  
Athaliana PWY-561 Arabidopsis thaliana pathologic  
Athaliana PWY-5885 Arabidopsis thaliana pathologic  
Athaliana PWY-5971 Arabidopsis thaliana pathologic  
Athaliana PWY-5989 Arabidopsis thaliana pathologic  
Athaliana PWY66-389 Arabidopsis thaliana pathologic  
Athaliana PWY-6733 Arabidopsis thaliana pathologic  
Athaliana PWY-6803 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G49430 0.5kb upstream 0.5kb upstream 5283 true Chr1: 18290543-18295825 Arabidopsis thaliana
AT1G49430 0.5kb upstream 0.5kb upstream 500 false Chr1: 18290543-18291042 Arabidopsis thaliana
AT1G49430 0.5kb downstream 0.5kb downstream 5283 true Chr1: 18291043-18296325 Arabidopsis thaliana
AT1G49430 0.5kb downstream 0.5kb downstream 500 false Chr1: 18295826-18296325 Arabidopsis thaliana
AT1G49430 1.0kb upstream 1.0kb upstream 5783 true Chr1: 18290043-18295825 Arabidopsis thaliana
AT1G49430 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18290043-18291042 Arabidopsis thaliana
AT1G49430 1.0kb downstream 1.0kb downstream 5783 true Chr1: 18291043-18296825 Arabidopsis thaliana
AT1G49430 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18295826-18296825 Arabidopsis thaliana
AT1G49430 2.0kb upstream 2.0kb upstream 6783 true Chr1: 18289043-18295825 Arabidopsis thaliana
AT1G49430 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18289043-18291042 Arabidopsis thaliana
AT1G49430 2.0kb downstream 2.0kb downstream 6783 true Chr1: 18291043-18297825 Arabidopsis thaliana
AT1G49430 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18295826-18297825 Arabidopsis thaliana
AT1G49430 5.0kb upstream 5.0kb upstream 9783 true Chr1: 18286043-18295825 Arabidopsis thaliana
AT1G49430 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18286043-18291042 Arabidopsis thaliana
AT1G49430 5.0kb downstream 5.0kb downstream 9783 true Chr1: 18291043-18300825 Arabidopsis thaliana
AT1G49430 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18295826-18300825 Arabidopsis thaliana
AT1G49430 10.0kb upstream 10.0kb upstream 14783 true Chr1: 18281043-18295825 Arabidopsis thaliana
AT1G49430 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18281043-18291042 Arabidopsis thaliana
AT1G49430 10.0kb downstream 10.0kb downstream 14783 true Chr1: 18291043-18305825 Arabidopsis thaliana
AT1G49430 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18295826-18305825 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370491 5261 Brassicaceae View MSA
123830194 5264 Brassicales-Malvales View MSA
124339284 5266 SBM View MSA
124245132 5268 Malvidae View MSA
124069008 5270 Rosid View MSA
123751064 5271 Pentapetalae View MSA
122791747 5272 Eudicot View MSA
122047711 5273 Angiosperm View MSA
121350386 5274 Embryophyte View MSA
123426542 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.763        
cufflinks 4.489        
cufflinks 4.646        
cufflinks 7.08       High
cufflinks 4.138       Low
cufflinks 7.43       High

0 Strain