Gene : JP630 A. thaliana TAIR10
Primary Identifier:  ? AT1G23760 Defline:  (1 of 3) PTHR31458//PTHR31458:SF3 - FAMILY NOT NAMED // POLYGALACTURONASE NON-CATALYTIC SUBUNIT JP630-RELATED
Genomic Order:  2407 Name:  ? AT1G23760
Secondary Identifier:  ? PAC:19653489
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G23760 0.5kb upstream 0.5kb upstream 2756 true Chr1: 8401546-8404301 Arabidopsis thaliana
AT1G23760 0.5kb upstream 0.5kb upstream 500 false Chr1: 8401546-8402045 Arabidopsis thaliana
AT1G23760 0.5kb downstream 0.5kb downstream 2756 true Chr1: 8402046-8404801 Arabidopsis thaliana
AT1G23760 0.5kb downstream 0.5kb downstream 500 false Chr1: 8404302-8404801 Arabidopsis thaliana
AT1G23760 1.0kb upstream 1.0kb upstream 3256 true Chr1: 8401046-8404301 Arabidopsis thaliana
AT1G23760 1.0kb upstream 1.0kb upstream 1000 false Chr1: 8401046-8402045 Arabidopsis thaliana
AT1G23760 1.0kb downstream 1.0kb downstream 3256 true Chr1: 8402046-8405301 Arabidopsis thaliana
AT1G23760 1.0kb downstream 1.0kb downstream 1000 false Chr1: 8404302-8405301 Arabidopsis thaliana
AT1G23760 2.0kb upstream 2.0kb upstream 4256 true Chr1: 8400046-8404301 Arabidopsis thaliana
AT1G23760 2.0kb upstream 2.0kb upstream 2000 false Chr1: 8400046-8402045 Arabidopsis thaliana
AT1G23760 2.0kb downstream 2.0kb downstream 4256 true Chr1: 8402046-8406301 Arabidopsis thaliana
AT1G23760 2.0kb downstream 2.0kb downstream 2000 false Chr1: 8404302-8406301 Arabidopsis thaliana
AT1G23760 5.0kb upstream 5.0kb upstream 7256 true Chr1: 8397046-8404301 Arabidopsis thaliana
AT1G23760 5.0kb upstream 5.0kb upstream 5000 false Chr1: 8397046-8402045 Arabidopsis thaliana
AT1G23760 5.0kb downstream 5.0kb downstream 7256 true Chr1: 8402046-8409301 Arabidopsis thaliana
AT1G23760 5.0kb downstream 5.0kb downstream 5000 false Chr1: 8404302-8409301 Arabidopsis thaliana
AT1G23760 10.0kb upstream 10.0kb upstream 12256 true Chr1: 8392046-8404301 Arabidopsis thaliana
AT1G23760 10.0kb upstream 10.0kb upstream 10000 false Chr1: 8392046-8402045 Arabidopsis thaliana
AT1G23760 10.0kb downstream 10.0kb downstream 12256 true Chr1: 8402046-8414301 Arabidopsis thaliana
AT1G23760 10.0kb downstream 10.0kb downstream 10000 false Chr1: 8404302-8414301 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343685 5261 Brassicaceae View MSA
123783807 5264 Brassicales-Malvales View MSA
124282020 5266 SBM View MSA
124136683 5268 Malvidae View MSA
124060515 5270 Rosid View MSA
123747690 5271 Pentapetalae View MSA
122795038 5272 Eudicot View MSA
122050223 5273 Angiosperm View MSA
121351029 5274 Embryophyte View MSA
123381981 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.199     Low  
cufflinks 2.712        
cufflinks 0.136     Low  
cufflinks 3.9       High
cufflinks 0.135     Low  
cufflinks 2.411        

0 Strain