Gene : PIN7 A. thaliana TAIR10
Primary Identifier:  ? AT1G23080 Defline:  (1 of 1) PTHR31752:SF18 - AUXIN EFFLUX CARRIER COMPONENT 3-RELATED
Genomic Order:  2337 Name:  ? AT1G23080
Secondary Identifier:  ? PAC:19650513
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G23080 0.5kb upstream 0.5kb upstream 3494 true Chr1: 8180577-8184070 Arabidopsis thaliana
AT1G23080 0.5kb upstream 0.5kb upstream 500 false Chr1: 8183571-8184070 Arabidopsis thaliana
AT1G23080 0.5kb downstream 0.5kb downstream 3494 true Chr1: 8180077-8183570 Arabidopsis thaliana
AT1G23080 0.5kb downstream 0.5kb downstream 500 false Chr1: 8180077-8180576 Arabidopsis thaliana
AT1G23080 1.0kb upstream 1.0kb upstream 3994 true Chr1: 8180577-8184570 Arabidopsis thaliana
AT1G23080 1.0kb upstream 1.0kb upstream 1000 false Chr1: 8183571-8184570 Arabidopsis thaliana
AT1G23080 1.0kb downstream 1.0kb downstream 3994 true Chr1: 8179577-8183570 Arabidopsis thaliana
AT1G23080 1.0kb downstream 1.0kb downstream 1000 false Chr1: 8179577-8180576 Arabidopsis thaliana
AT1G23080 2.0kb upstream 2.0kb upstream 4994 true Chr1: 8180577-8185570 Arabidopsis thaliana
AT1G23080 2.0kb upstream 2.0kb upstream 2000 false Chr1: 8183571-8185570 Arabidopsis thaliana
AT1G23080 2.0kb downstream 2.0kb downstream 4994 true Chr1: 8178577-8183570 Arabidopsis thaliana
AT1G23080 2.0kb downstream 2.0kb downstream 2000 false Chr1: 8178577-8180576 Arabidopsis thaliana
AT1G23080 5.0kb upstream 5.0kb upstream 7994 true Chr1: 8180577-8188570 Arabidopsis thaliana
AT1G23080 5.0kb upstream 5.0kb upstream 5000 false Chr1: 8183571-8188570 Arabidopsis thaliana
AT1G23080 5.0kb downstream 5.0kb downstream 7994 true Chr1: 8175577-8183570 Arabidopsis thaliana
AT1G23080 5.0kb downstream 5.0kb downstream 5000 false Chr1: 8175577-8180576 Arabidopsis thaliana
AT1G23080 10.0kb upstream 10.0kb upstream 12994 true Chr1: 8180577-8193570 Arabidopsis thaliana
AT1G23080 10.0kb upstream 10.0kb upstream 10000 false Chr1: 8183571-8193570 Arabidopsis thaliana
AT1G23080 10.0kb downstream 10.0kb downstream 12994 true Chr1: 8170577-8183570 Arabidopsis thaliana
AT1G23080 10.0kb downstream 10.0kb downstream 10000 false Chr1: 8170577-8180576 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364033 5261 Brassicaceae View MSA
123839868 5264 Brassicales-Malvales View MSA
124349829 5266 SBM View MSA
124250518 5268 Malvidae View MSA
124067962 5270 Rosid View MSA
123747841 5271 Pentapetalae View MSA
122796951 5272 Eudicot View MSA
122046141 5273 Angiosperm View MSA
121351759 5274 Embryophyte View MSA
123382310 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.373       High
cufflinks 4.94        
cufflinks 7.682        
cufflinks 5.112        
cufflinks 6.432        
cufflinks 5.044        

0 Strain