Gene : PFL A. thaliana TAIR10
Primary Identifier:  ? AT1G22780 Defline:  (1 of 3) K02964 - small subunit ribosomal protein S18e (RP-S18e, RPS18)
Genomic Order:  2303 Name:  ? AT1G22780
Secondary Identifier:  ? PAC:19655876
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Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G22780 0.5kb upstream 0.5kb upstream 1979 true Chr1: 8067364-8069342 Arabidopsis thaliana
AT1G22780 0.5kb upstream 0.5kb upstream 500 false Chr1: 8067364-8067863 Arabidopsis thaliana
AT1G22780 0.5kb downstream 0.5kb downstream 1979 true Chr1: 8067864-8069842 Arabidopsis thaliana
AT1G22780 0.5kb downstream 0.5kb downstream 500 false Chr1: 8069343-8069842 Arabidopsis thaliana
AT1G22780 1.0kb upstream 1.0kb upstream 2479 true Chr1: 8066864-8069342 Arabidopsis thaliana
AT1G22780 1.0kb upstream 1.0kb upstream 1000 false Chr1: 8066864-8067863 Arabidopsis thaliana
AT1G22780 1.0kb downstream 1.0kb downstream 2479 true Chr1: 8067864-8070342 Arabidopsis thaliana
AT1G22780 1.0kb downstream 1.0kb downstream 1000 false Chr1: 8069343-8070342 Arabidopsis thaliana
AT1G22780 2.0kb upstream 2.0kb upstream 3479 true Chr1: 8065864-8069342 Arabidopsis thaliana
AT1G22780 2.0kb upstream 2.0kb upstream 2000 false Chr1: 8065864-8067863 Arabidopsis thaliana
AT1G22780 2.0kb downstream 2.0kb downstream 3479 true Chr1: 8067864-8071342 Arabidopsis thaliana
AT1G22780 2.0kb downstream 2.0kb downstream 2000 false Chr1: 8069343-8071342 Arabidopsis thaliana
AT1G22780 5.0kb upstream 5.0kb upstream 6479 true Chr1: 8062864-8069342 Arabidopsis thaliana
AT1G22780 5.0kb upstream 5.0kb upstream 5000 false Chr1: 8062864-8067863 Arabidopsis thaliana
AT1G22780 5.0kb downstream 5.0kb downstream 6479 true Chr1: 8067864-8074342 Arabidopsis thaliana
AT1G22780 5.0kb downstream 5.0kb downstream 5000 false Chr1: 8069343-8074342 Arabidopsis thaliana
AT1G22780 10.0kb upstream 10.0kb upstream 11479 true Chr1: 8057864-8069342 Arabidopsis thaliana
AT1G22780 10.0kb upstream 10.0kb upstream 10000 false Chr1: 8057864-8067863 Arabidopsis thaliana
AT1G22780 10.0kb downstream 10.0kb downstream 11479 true Chr1: 8067864-8079342 Arabidopsis thaliana
AT1G22780 10.0kb downstream 10.0kb downstream 10000 false Chr1: 8069343-8079342 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376535 5261 Brassicaceae View MSA
123841157 5264 Brassicales-Malvales View MSA
124344283 5266 SBM View MSA
124249653 5268 Malvidae View MSA
124071434 5270 Rosid View MSA
123753104 5271 Pentapetalae View MSA
122796798 5272 Eudicot View MSA
122048414 5273 Angiosperm View MSA
121348769 5274 Embryophyte View MSA
123423828 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 74.328     High  
cufflinks 123.676     High  
cufflinks 69.733     High  
cufflinks 126.153     High  
cufflinks 56.751     High Low
cufflinks 139.809     High High

0 Strain