Gene : AT1G22540 A. thaliana TAIR10
Defline:  (1 of 7) PTHR11654//PTHR11654:SF94 - OLIGOPEPTIDE TRANSPORTER-RELATED // PROTEIN NRT1/ PTR FAMILY 5.10-RELATED Genomic Order:  2279
Name:  ? AT1G22540 Secondary Identifier:  ? PAC:19657244
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G22540 0.5kb upstream 0.5kb upstream 2895 true Chr1: 7963542-7966436 Arabidopsis thaliana
AT1G22540 0.5kb upstream 0.5kb upstream 500 false Chr1: 7963542-7964041 Arabidopsis thaliana
AT1G22540 0.5kb downstream 0.5kb downstream 2895 true Chr1: 7964042-7966936 Arabidopsis thaliana
AT1G22540 0.5kb downstream 0.5kb downstream 500 false Chr1: 7966437-7966936 Arabidopsis thaliana
AT1G22540 1.0kb upstream 1.0kb upstream 3395 true Chr1: 7963042-7966436 Arabidopsis thaliana
AT1G22540 1.0kb upstream 1.0kb upstream 1000 false Chr1: 7963042-7964041 Arabidopsis thaliana
AT1G22540 1.0kb downstream 1.0kb downstream 3395 true Chr1: 7964042-7967436 Arabidopsis thaliana
AT1G22540 1.0kb downstream 1.0kb downstream 1000 false Chr1: 7966437-7967436 Arabidopsis thaliana
AT1G22540 2.0kb upstream 2.0kb upstream 4395 true Chr1: 7962042-7966436 Arabidopsis thaliana
AT1G22540 2.0kb upstream 2.0kb upstream 2000 false Chr1: 7962042-7964041 Arabidopsis thaliana
AT1G22540 2.0kb downstream 2.0kb downstream 4395 true Chr1: 7964042-7968436 Arabidopsis thaliana
AT1G22540 2.0kb downstream 2.0kb downstream 2000 false Chr1: 7966437-7968436 Arabidopsis thaliana
AT1G22540 5.0kb upstream 5.0kb upstream 7395 true Chr1: 7959042-7966436 Arabidopsis thaliana
AT1G22540 5.0kb upstream 5.0kb upstream 5000 false Chr1: 7959042-7964041 Arabidopsis thaliana
AT1G22540 5.0kb downstream 5.0kb downstream 7395 true Chr1: 7964042-7971436 Arabidopsis thaliana
AT1G22540 5.0kb downstream 5.0kb downstream 5000 false Chr1: 7966437-7971436 Arabidopsis thaliana
AT1G22540 10.0kb upstream 10.0kb upstream 12395 true Chr1: 7954042-7966436 Arabidopsis thaliana
AT1G22540 10.0kb upstream 10.0kb upstream 10000 false Chr1: 7954042-7964041 Arabidopsis thaliana
AT1G22540 10.0kb downstream 10.0kb downstream 12395 true Chr1: 7964042-7976436 Arabidopsis thaliana
AT1G22540 10.0kb downstream 10.0kb downstream 10000 false Chr1: 7966437-7976436 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363409 5261 Brassicaceae View MSA
123833277 5264 Brassicales-Malvales View MSA
124339663 5266 SBM View MSA
124250409 5268 Malvidae View MSA
124072742 5270 Rosid View MSA
123752034 5271 Pentapetalae View MSA
122791264 5272 Eudicot View MSA
122045337 5273 Angiosperm View MSA
121350655 5274 Embryophyte View MSA
123428779 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.774        
cufflinks 5.576        
cufflinks 6.611        
cufflinks 5.921        
cufflinks 9.052       High
cufflinks 5.746        

0 Strain