Gene : AT1G64180 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31071:SF9 - INTRACELLULAR PROTEIN TRANSPORT PROTEIN USO1-LIKE PROTEIN Genomic Order:  5336
Name:  ? AT1G64180 Secondary Identifier:  ? PAC:19649531
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G64180 0.5kb upstream 0.5kb upstream 3344 true Chr1: 23821016-23824359 Arabidopsis thaliana
AT1G64180 0.5kb upstream 0.5kb upstream 500 false Chr1: 23821016-23821515 Arabidopsis thaliana
AT1G64180 0.5kb downstream 0.5kb downstream 3344 true Chr1: 23821516-23824859 Arabidopsis thaliana
AT1G64180 0.5kb downstream 0.5kb downstream 500 false Chr1: 23824360-23824859 Arabidopsis thaliana
AT1G64180 1.0kb upstream 1.0kb upstream 3844 true Chr1: 23820516-23824359 Arabidopsis thaliana
AT1G64180 1.0kb upstream 1.0kb upstream 1000 false Chr1: 23820516-23821515 Arabidopsis thaliana
AT1G64180 1.0kb downstream 1.0kb downstream 3844 true Chr1: 23821516-23825359 Arabidopsis thaliana
AT1G64180 1.0kb downstream 1.0kb downstream 1000 false Chr1: 23824360-23825359 Arabidopsis thaliana
AT1G64180 2.0kb upstream 2.0kb upstream 4844 true Chr1: 23819516-23824359 Arabidopsis thaliana
AT1G64180 2.0kb upstream 2.0kb upstream 2000 false Chr1: 23819516-23821515 Arabidopsis thaliana
AT1G64180 2.0kb downstream 2.0kb downstream 4844 true Chr1: 23821516-23826359 Arabidopsis thaliana
AT1G64180 2.0kb downstream 2.0kb downstream 2000 false Chr1: 23824360-23826359 Arabidopsis thaliana
AT1G64180 5.0kb upstream 5.0kb upstream 7844 true Chr1: 23816516-23824359 Arabidopsis thaliana
AT1G64180 5.0kb upstream 5.0kb upstream 5000 false Chr1: 23816516-23821515 Arabidopsis thaliana
AT1G64180 5.0kb downstream 5.0kb downstream 7844 true Chr1: 23821516-23829359 Arabidopsis thaliana
AT1G64180 5.0kb downstream 5.0kb downstream 5000 false Chr1: 23824360-23829359 Arabidopsis thaliana
AT1G64180 10.0kb upstream 10.0kb upstream 12844 true Chr1: 23811516-23824359 Arabidopsis thaliana
AT1G64180 10.0kb upstream 10.0kb upstream 10000 false Chr1: 23811516-23821515 Arabidopsis thaliana
AT1G64180 10.0kb downstream 10.0kb downstream 12844 true Chr1: 23821516-23834359 Arabidopsis thaliana
AT1G64180 10.0kb downstream 10.0kb downstream 10000 false Chr1: 23824360-23834359 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372440 5261 Brassicaceae View MSA
123800363 5264 Brassicales-Malvales View MSA
124297780 5266 SBM View MSA
124149582 5268 Malvidae View MSA
124072871 5270 Rosid View MSA
123736575 5271 Pentapetalae View MSA
122797498 5272 Eudicot View MSA
122044970 5273 Angiosperm View MSA
121310375 5274 Embryophyte View MSA
123347876 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.964        
cufflinks 4.284       High
cufflinks 2.865        
cufflinks 3.931        
cufflinks 2.566       Low
cufflinks 3.924        

0 Strain