Gene : ISPF A. thaliana TAIR10
Primary Identifier:  ? AT1G63970 Defline:  (1 of 1) 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase
Genomic Order:  5312 Name:  ? AT1G63970
Secondary Identifier:  ? PAC:19651588
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7560 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G63970 0.5kb upstream 0.5kb upstream 2174 true Chr1: 23738691-23740864 Arabidopsis thaliana
AT1G63970 0.5kb upstream 0.5kb upstream 500 false Chr1: 23740365-23740864 Arabidopsis thaliana
AT1G63970 0.5kb downstream 0.5kb downstream 2174 true Chr1: 23738191-23740364 Arabidopsis thaliana
AT1G63970 0.5kb downstream 0.5kb downstream 500 false Chr1: 23738191-23738690 Arabidopsis thaliana
AT1G63970 1.0kb upstream 1.0kb upstream 2674 true Chr1: 23738691-23741364 Arabidopsis thaliana
AT1G63970 1.0kb upstream 1.0kb upstream 1000 false Chr1: 23740365-23741364 Arabidopsis thaliana
AT1G63970 1.0kb downstream 1.0kb downstream 2674 true Chr1: 23737691-23740364 Arabidopsis thaliana
AT1G63970 1.0kb downstream 1.0kb downstream 1000 false Chr1: 23737691-23738690 Arabidopsis thaliana
AT1G63970 2.0kb upstream 2.0kb upstream 3674 true Chr1: 23738691-23742364 Arabidopsis thaliana
AT1G63970 2.0kb upstream 2.0kb upstream 2000 false Chr1: 23740365-23742364 Arabidopsis thaliana
AT1G63970 2.0kb downstream 2.0kb downstream 3674 true Chr1: 23736691-23740364 Arabidopsis thaliana
AT1G63970 2.0kb downstream 2.0kb downstream 2000 false Chr1: 23736691-23738690 Arabidopsis thaliana
AT1G63970 5.0kb upstream 5.0kb upstream 6674 true Chr1: 23738691-23745364 Arabidopsis thaliana
AT1G63970 5.0kb upstream 5.0kb upstream 5000 false Chr1: 23740365-23745364 Arabidopsis thaliana
AT1G63970 5.0kb downstream 5.0kb downstream 6674 true Chr1: 23733691-23740364 Arabidopsis thaliana
AT1G63970 5.0kb downstream 5.0kb downstream 5000 false Chr1: 23733691-23738690 Arabidopsis thaliana
AT1G63970 10.0kb upstream 10.0kb upstream 11674 true Chr1: 23738691-23750364 Arabidopsis thaliana
AT1G63970 10.0kb upstream 10.0kb upstream 10000 false Chr1: 23740365-23750364 Arabidopsis thaliana
AT1G63970 10.0kb downstream 10.0kb downstream 11674 true Chr1: 23728691-23740364 Arabidopsis thaliana
AT1G63970 10.0kb downstream 10.0kb downstream 10000 false Chr1: 23728691-23738690 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365152 5261 Brassicaceae View MSA
123835150 5264 Brassicales-Malvales View MSA
124346414 5266 SBM View MSA
124238483 5268 Malvidae View MSA
124062148 5270 Rosid View MSA
123737612 5271 Pentapetalae View MSA
122786124 5272 Eudicot View MSA
122042234 5273 Angiosperm View MSA
121344039 5274 Embryophyte View MSA
123423768 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.655        
cufflinks 3.18        
cufflinks 26.775     High  
cufflinks 3.274        
cufflinks 26.695     High  
cufflinks 2.787        

0 Strain