Gene : AT1G63300 A. thaliana TAIR10
Defline:  (1 of 1) KOG0978//KOG4568 - E3 ubiquitin ligase involved in syntaxin degradation // Cytoskeleton-associated protein and related proteins Genomic Order:  5248
Name:  ? AT1G63300 Secondary Identifier:  ? PAC:19651497
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G63300 0.5kb upstream 0.5kb upstream 4528 true Chr1: 23481693-23486220 Arabidopsis thaliana
AT1G63300 0.5kb upstream 0.5kb upstream 500 false Chr1: 23481693-23482192 Arabidopsis thaliana
AT1G63300 0.5kb downstream 0.5kb downstream 4528 true Chr1: 23482193-23486720 Arabidopsis thaliana
AT1G63300 0.5kb downstream 0.5kb downstream 500 false Chr1: 23486221-23486720 Arabidopsis thaliana
AT1G63300 1.0kb upstream 1.0kb upstream 5028 true Chr1: 23481193-23486220 Arabidopsis thaliana
AT1G63300 1.0kb upstream 1.0kb upstream 1000 false Chr1: 23481193-23482192 Arabidopsis thaliana
AT1G63300 1.0kb downstream 1.0kb downstream 5028 true Chr1: 23482193-23487220 Arabidopsis thaliana
AT1G63300 1.0kb downstream 1.0kb downstream 1000 false Chr1: 23486221-23487220 Arabidopsis thaliana
AT1G63300 2.0kb upstream 2.0kb upstream 6028 true Chr1: 23480193-23486220 Arabidopsis thaliana
AT1G63300 2.0kb upstream 2.0kb upstream 2000 false Chr1: 23480193-23482192 Arabidopsis thaliana
AT1G63300 2.0kb downstream 2.0kb downstream 6028 true Chr1: 23482193-23488220 Arabidopsis thaliana
AT1G63300 2.0kb downstream 2.0kb downstream 2000 false Chr1: 23486221-23488220 Arabidopsis thaliana
AT1G63300 5.0kb upstream 5.0kb upstream 9028 true Chr1: 23477193-23486220 Arabidopsis thaliana
AT1G63300 5.0kb upstream 5.0kb upstream 5000 false Chr1: 23477193-23482192 Arabidopsis thaliana
AT1G63300 5.0kb downstream 5.0kb downstream 9028 true Chr1: 23482193-23491220 Arabidopsis thaliana
AT1G63300 5.0kb downstream 5.0kb downstream 5000 false Chr1: 23486221-23491220 Arabidopsis thaliana
AT1G63300 10.0kb upstream 10.0kb upstream 14028 true Chr1: 23472193-23486220 Arabidopsis thaliana
AT1G63300 10.0kb upstream 10.0kb upstream 10000 false Chr1: 23472193-23482192 Arabidopsis thaliana
AT1G63300 10.0kb downstream 10.0kb downstream 14028 true Chr1: 23482193-23496220 Arabidopsis thaliana
AT1G63300 10.0kb downstream 10.0kb downstream 10000 false Chr1: 23486221-23496220 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040955 5273 Angiosperm View MSA
122371079 5261 Brassicaceae View MSA
123836125 5264 Brassicales-Malvales View MSA
124351344 5266 SBM View MSA
124247012 5268 Malvidae View MSA
124066145 5270 Rosid View MSA
123747619 5271 Pentapetalae View MSA
122785648 5272 Eudicot View MSA
121348283 5274 Embryophyte View MSA
123428094 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.969        
cufflinks 5.156        
cufflinks 2.808        
cufflinks 7.332       High
cufflinks 1.521       Low
cufflinks 7.389       High

0 Strain